Gene detail

Detailed information of ANN02171-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:39690029...39694583
NR annotation: CAH3164976.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P42700	RNA-binding protein RO60 OS=Xenopus laevis OX=8355 GN=ro60 PE=1 SV=1
P10155	RNA-binding protein RO60 OS=Homo sapiens OX=9606 GN=RO60 PE=1 SV=2
O08848	RNA-binding protein Ro60 OS=Mus musculus OX=10090 GN=RO60 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05731	TROVE	TROVE domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR040322	Family	RNA-binding protein RO60	Interproscan
IPR037214	Homologous_superfamily	TROVE domain superfamily	Interproscan
IPR008858	Domain	TROVE domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14202	60 KDA RIBONUCLEOPROTEIN SSA/RO	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11089	TROVE2, SSA2; 60 kDa SS-A/Ro ribonucleoprotein	-	Systemic lupus erythematosus	ko05322	deepkoala