Gene detail

Detailed information of ANN02325-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:42922625...42949222
NR annotation: CAH3147137.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN02325-RA

ATGGCTGCCGAATCATTGAATGAAGAAATAGAGTATGTAAAATTGCATAGAATTAGACCAGTTTTGCTTCACTTTTATTTAGCACCTTTCATACCAATCTATGTGATCTGGCTGTACTTTTGGACAGTCGTTTACGGAGTCACGGATTATTTTGAAGCTGGTCTCATAGCTTTAGCGGTTGTAGGACTTCTCCAAATTCTTTCATGTCTCTTCTGCCACTGGTCTGTTCACGTGAGGTGCTTCTTCACTTGTTCAACGGAAACATCTGCAGCTCTTGCGACGGTAATTAAAGTTGTTCCAACAGCAAATAACGGTTCACCAGAGTTGCTCAATCTTCACCATGAGCAGGATAAAGAGACAAAGAAAGAGGTAATCTGGTTCAATTTTCAAAAGACAAAGTATGTCTTTGATAGTGAAGAAAAGAAGCAATTCTGCCAGGTGGCCTTTCCAATTAATGAAACCATGGAACATTACAACAGTTGTAAAGGATATCAAGAGGAAGCTGATGTTGATAGAGCCAAGAGAAGATATGGATTGAATGAACTTCAGATGGATGTGCCTGAGTTTGGGGAATTATTTAAAGAAAGAGCCACTGCACCATTCTTTGTGTTTCAAGTGTTTTGTGTTGGATTGTGGTGTCTTGATGAGTACTGGTACTACAGTGTCTTCACCCTGTTCATGTTAATTGCTTTTGAGGCCACTCTTGTACAGCAGCAAATGAGAAACATGAAGGAAATTAGAAATATGGGCAGCAAACCTCACTTGATACAGGTTTACAGACACAGGAAATGGAGACCAATTTTGAGCTCTGAGCTTCTTCCAGGCGATATTTGTTCTATTGGGAGATCTAAAAACTCTGATGTGCTCATTCCATGTGATATTTTGTTGCTGCGAGGTTCCTGTATTGTAGATGAAGCAATGTTAACTGGAGAGTCAGTCCCACAGATGAAGGAGCCAATTGAAGATTTGCCAGATGGTGAGGTTTTTGATTTAGATCAACATGGTAAATTACACGTGCTTTCAGGGGGAACGAAAGTTGTGCAGCATTCTCCTCCACTCAAGACTTCTGCTGGGCTCAAAGCTCCTGATAATGGTGCTGTAGCTTATGTGTTGAGGACTGGATTCAACACATCTCAGGGAAAGCTGCTTAGAACAATTTTGTTTGGTGTAAAGCGAGTAACGGCAAACAATCTGGAGACATTCCTCTTCATTCTGTTTTTACTTATATTTGCTGTCAGTGCTGCAGGTTACGTTTGGATTAAAGGCACTGAAGATCCTAAGAGGAATCGCTATAAGCTTTTCTTGGAGTGCACCCTTATACTGACATCAGTAGTGCCACCAGAACTTCCTATTGAATTGTCTCTAGCTGTCAACTCATCTCTGATGGCTTTACAGAAACTAGGGGTGTACTGCACAGAGCCTTTCAGAATTCCTTTTGCTGGTAAAGTAGATGTGTGCTGCTTTGACAAAACAGGAACACTGACAAGTGATAACCTCATAGTGCAGGGTGTGGCTGGACTCAAGGATGACGATGAAGTGTGTGCAGTGTGTGATGCTCCAGATGAAACTGCGCATGTGCTGGCTTCATGTCACTCACTGGCCTTCCTGGATGACAGCTTAGTTGGGGATCCGCTTGAGAAAGCAGTGTTACAAGCTGTGGATTGGAGGCTTACAAGAGGCGATATCGTGATGCCCAACAAAGGAAGGCGTGTCTCTATGCGTATCGCCCATCGACATCATTTCTCCAGCGCTCTTAAGCGAATGTCAGCCATTGTGTCTTTACAGAATCCCGGTTCATCGTCCAGTGAGTACATTGTAACAGTGAAAGGAGCACCTGAAACTCTCAGATCAATGTACAAGACTGTTCCTAGAAACTATGACACCATTTATCACAGAATGACGTGTCAAGGTGCCAGGGTATTGGCGCTTGGATACAAGAAGATAGGAGACATACCAGCTAAAGAGGTCCGTGACTTGAAGCGTGAGGAGTGTGAATGTGATCTGCAGTTTGCGGGATTTGTTGTAATCGCATGTCCACTAAAGAACGATTCAAAAGCAGCCATTAAACAGATCCAGGAGTCGTCACATCACCTGACTATGATCACTGGGGATAACCCGCTGACCGCTTGTCATGTGGCTCGGGAGCTTCGGTTAACAAAACGTGAAATTGTGGTTCTGTCGCCGCCTGAAAACACAAATGATCATGTAGAAAGCGAGTGGCACTGGCAGCCAGTGGACCGCTCCTTCAGTCTTCCCATCATTCCCTCTGGTGGTACCAAGGAATTGACTTCTAAATTCGACTTGTGTGTCACAGGCGAGGCATTTTCGTACTTACAGTCTACTCAGAAATTATCCAAGTTTTTCCACTCCATCATTCAAAACGTCCAAGTGTTCGCTCGAGTGGCTCCTAAACAAAAGGAACTCGTGATAACTAAACTGAAGAGTAAAGGTTTTGTCACGTTAATGTGCGGTGACGGCACTAATGACGTAGGAGCACTCAAGCATGCGCACTGTGGTGTCGCCCTGCTTGCCGGTGCACCAGAGAAACTCCCTGAGCAAAGCCGGAAAGGAGGTGTAAAGTCTAAAGACGACAAACCCTCTACATCGCAACAGCAAGACGATAAAAGTAAGAATGATTCGATCAAGATAGTGTCCAGAGCAAACATCCCCCCTGCATCTGCCAAAGGCTCCTCACGAGCTGCTAAAATGCGTGCTATGGCCAGGGGGGAGGACACCGCCTCCACCTTAAAACAAGAACAGCAGAAAAAAATCCAGGAGATGTTGAAGCAGATGGATGAGATGGATCAGCCTCAAGTTGTACGGTTAGGAGATGCGTCCATCGCGTCACCTTTTACCTCCAAACTCTCCTCTGTTATGGCCGTTTGTCACATCATAAAGCAGGGTCGCTGCACGCTTGTCACCACACTGCAGATGTTCAAGATTCTGGCGTTAAACGCCCTCGTTCTCGCTTACAGTCAAAGCGTGCTCTACTTAGATGGAATCAAATTTAGTGACGGACAAGCAACATTACAGGGAGTCCTATTAGCCGGCTGCTTCTTGTTTATATCACGGTCTAAGCCTCTCTCCACTCTGTCTAATCGACGTCCTTTGCAGAACATCTTTAACATTTACACCATATTAACAGTCCTTTGTCAATTTGCCGTTCACTTCTGGGCGCTTGTGTTCATGGTACATCAAGCGAAACGACTCACCCCTGGAATGGGAGCTCAGCACGTAGACTTGGAAGCCAAGTTTCAACCCACTATTGTTAATAGTACTGTTTACATCGTGTCCATAGCTATGCAACTAGCAACCTTCGCTATCAACTACAAGGGTCACCCGTTTATGGAGAGTCTCTTGGATAACAAGGCGTTACTGTACAGCTTGTTGGCCTCTGGTGGATTCGTTGTTTGTATGATAACAGGTTCAGTTCCAGAAATCAATCAACAGTTTGAAATCGTTACGTTCCCACCTAAGTTCCGCGAAATTTTCATGCAAGTTCTTCTTGCGGATTTTGCCACAGTCTTTGTCATGGACAGAATACTGGATTTCCTGCTTGGCAGCGCAAAGCTACGACAACATTAA

Transcript

ANN02325-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HD20	Endoplasmic reticulum transmembrane helix translocase OS=Homo sapiens OX=9606 GN=ATP13A1 PE=1 SV=2
Q9EPE9	Endoplasmic reticulum transmembrane helix translocase OS=Mus musculus OX=10090 GN=Atp13a1 PE=1 SV=2
P90747	Probable manganese-transporting ATPase catp-8 OS=Caenorhabditis elegans OX=6239 GN=catp-8 PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003290 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00122 all species →	E1-E2_ATPase	E1-E2 ATPase	Family	Interproscan
PF13246 all species →	Cation_ATPase	Cation transport ATPase (P-type)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008250 all species →	Homologous_superfamily	P-type ATPase, A domain superfamily	Interproscan
IPR023298 all species →	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR044492 all species →	Domain	P-type ATPase, haloacid dehalogenase domain	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR006544 all species →	Family	P-type ATPase, subfamily V	Interproscan
IPR018303 all species →	PTM	P-type ATPase, phosphorylation site	Interproscan
IPR047820 all species →	Family	P5A-type ATPase	Interproscan
IPR001757 all species →	Family	P-type ATPase	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR023299 all species →	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45630 all species →	CATION-TRANSPORTING ATPASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0140358 all species →	Molecular Function	P-type transmembrane transporter activity	Interproscan
GO:0005215 all species →	Molecular Function	transporter activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0006874 all species →	Biological Process	intracellular calcium ion homeostasis	Interproscan
GO:0015662 all species →	Molecular Function	P-type ion transporter activity	Interproscan
GO:0019829 all species →	Molecular Function	ATPase-coupled monoatomic cation transmembrane transporter activity	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14950	ATP13A1, SPF1; manganese-transporting P-type ATPase	EC:7.2.2.-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.