Gene detail

Detailed information of ANN02340-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:43203556...43229662
NR annotation: XP_027059543.1, ubiquitin carboxyl-terminal hydrolase 20-like [Pocillopora damicornis]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN02340-RA

ATGCCGCCTTGCCCTCATTTGAATTCCATCGAAGAAGTTAATTTGGAAGAGATCAAGAGGAAAATGACTGAGGGGCACTGTGATCATTGTGAAAAGTCTGGATCAGACCTTTGGGTTTGTTTGCAGGTATTGTTGCATGTTATTCACCGAAAAAGGTCAGATCCCCATGACACATCATCTTTAATAATCTCCTGTTGTTTTGTCCAGAGATGTTGTTCATTTGTTGGCTGTGGAAGATTTGGTAACAATCACATTGAGCTTCACAGTCAGGAAGCCAACCATCACTTGTGTTTACACCTGCAAGATTTTCGCATGTGGTGTTTCAGCTGTCAGGGAGAGGTGCAGGCATCTGATGGTTCATCTGGATCAGCAAACAATGACATAACAAGTCCCTCCAGGCCAAAGGCTCATGAAGTTCTTGATATTGAAGATGCTCTGGAATCAGAAAGAGGGTTAAAACCAAGAGGGTTATGTGGCTTGGCAAACATTGGGAATACATGCTACATGAATGCTGCACTGCAGTCTTTGTCAAACTGTCCACCCCTTACACAATATTTCTTGGAGTGTAGCAGTGCAGCAAAAGAAACCAAGAACACTTCAGTCACCAGAAACTACTCACTTCTGATCAATGAGTTATGGTCAAGAAAAAGACCCAAATACATTGTACCCTCTCAGCTGTTGCGTAGTGTACGGTTGATTAATTCACAATTCAGAGGTTATGGACAACAGGATGCTCAGGAGTTTTTGCGTTGTATCATGGATCAGTTGCATGAGGAGTTGAAGCAGCCTGTGCCATCACTCACAGAGGACTCATTGTCATCTGACAGTGATGATGATGAACCAAACCATCATAACAAGAGATTGCTGGGAGGAACAAGTCTGCCACATGATGGAAACCTGCATGATGGAAACCATGATGTGGACATGTACTCTGACAGTGGTGAAGATGACGCAGACGATAAACCACTTCATGTCAACACAACCGAAGAACAACCCAACAAAGAGGCAGAGAGCAAGGCCAAACAAAGGAAAACCAATGGAGAGCCTGTCAGTGTTGATGACGTGACAGTGTCAGTTGAAGATGAGCCAATGAGTGATGCTGATAGTGAGCACTGTGATCAGGTTGATGAGGATATGGATGCTGACGACAGTGTGTTAATCAAGGAAGAAAAGCCTGTTGACCAAAGTACAGAGGGAAAGGTGAAGCAGCCATCACCTGTTGTACGACCAAAGAAGCCCAAAGTGGCAGAATCAAGTAAAAAGAAAGAACCAGTGAACTATAGCAGTATAGTGACTGATCTGTTTGATGGCACTATACAGAGTTCAGTGCAGTGTTTAACATGCCACAGGGTTTCTTCAAGAGCAGAAACATTTCAAGATGTGTCTCTCCCAATTCCAGGAAAGGATGAATTGACAGTTCTTCATGCTTCACAGTGCACTTCTCTAACATCCTGCTCATCTGTGATAGACAGGGATCGGGACAAAGGCTGGGTGGTGTCGATACTTGAATGGCTGAGAAGGTGGTTTCTTGGGCCCCAAGTTACTCTTCATGACTGTCTCTCAGCATTCTTTTCAGCAGATGAACTAAAAGGAGACAATATGTACAGTTGTGAAAAGTGTAAAAAGCTAAGAAATGGCATCAAACTTTGTAAAGTGATGCATCTTCCTGAGATTCTGTGTATTCACCTGAAGCGTTTCAAGCATGAAATGTACTTCTCATCAAAAATCAATCATTTCATTTCATTTCCTCTCACTGGTCTGGACATGAAACCCTTCCTAGTAAAAGATTTCAACAAATTGGAGCCCACTCAGAAATGCACAACATATGATCTTGTTGCGGTCATTACTCATCACGGAAGTGTTGGAGCTGGTCATTATGTGAGCTTTGCCAAGAATTATATAAATGGAAAATGGTACGAGTTCAATGACTCTTGGGTCAGTGAAGTTTCTGACTCATACGTGTCTGATGTGGAAGCCTATGTGTTATTTTACAGGAAATCAAGTGAAGAAGCCACCAAAGAGAGGCAGACTGTTTTTAATTTGCTGAAAGCTTCCCAGGCCAGTGAAGCAAGATATTTTGTGTCCAAGAAATGGCTGACAAAGTTCCAGTCTTGCATGGAGCCAGGTCCTATTACAAACTCAGACTTCATGTGCACGCATGCTGCTATTCATCCACTGAACATGGAGAGAATTCATGAGATAACTGTACCTCTTCCTGAATCTGTCTGGAGACATCTGCAAGCTAGGTTTGGAGGAGGTCCCCCGGCCACGAGTTTGAGCATGTGCAAACATTGCAAGAAAGCTCTTGATGAACTTGAAAGAAGGCGACAAAGAGAAATGGAAGATTTCAAAAGGTTGAACCATGACTACCCAGCCAACGACAACGTGGACACGTACTGCATCAGTATGCGATGGTTCAGACAGTGGGAGATGTTTGTCAAGGGACAAGAACACGATCCTCCAGGACCCATTGATAACAGTAATATTATATTTGTGAAAGGCAATACAAGAGTACTGAGACCTAACTCAGACTATGGACAGTTGTCCCTACAGACCTGGAGATTATTGCACGATATTTATGGTGGAGGGCCCGTGTATTACACTGAAGGAGAAAAGGACAATGAAGAGGAAAGACAAGACAAACAAGAACAAGATGAACAGGTTCAACAGGAATAG

Transcript

ANN02340-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R5Z6	Ubiquitin carboxyl-terminal hydrolase 20 OS=Pongo abelii OX=9601 GN=USP20 PE=2 SV=1
A7Z056	Ubiquitin carboxyl-terminal hydrolase 20 OS=Bos taurus OX=9913 GN=USP20 PE=2 SV=1
Q9Y2K6	Ubiquitin carboxyl-terminal hydrolase 20 OS=Homo sapiens OX=9606 GN=USP20 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003770 (this species only)
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species
Ubiquitin family	UBD\|ZnF\|ZnF_UBP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF06337 all species →	DUSP	DUSP domain	Domain	Interproscan
PF02148 all species →	zf-UBP	Zn-finger in ubiquitin-hydrolases and other protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR001607 all species →	Domain	Zinc finger, UBP-type	Interproscan
IPR006615 all species →	Domain	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	Interproscan
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR035927 all species →	Homologous_superfamily	DUSP-like superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR050185 all species →	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21646 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11848	USP20_33; ubiquitin carboxyl-terminal hydrolase 20/33	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.