Detailed information of ANN02376-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:43709777...43726692
NR annotation: XP_020604021.1, WD repeat-containing protein 47-like [Orbicella faveolata]
Species abbreviation LSCAB · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8CGF6WD repeat-containing protein 47 OS=Mus musculus OX=10090 GN=Wdr47 PE=1 SV=2
O94967WD repeat-containing protein 47 OS=Homo sapiens OX=9606 GN=WDR47 PE=1 SV=1
Q9LXN4Protein HIRA OS=Arabidopsis thaliana OX=3702 GN=HIRA PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004969 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan
PF12894
all species →		ANAPC4_WD40Anaphase-promoting complex subunit 4 WD40 domainRepeatInterproscan
PF17814
all species →		LisH_TPLLisH-like dimerisation domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR006594
all species →		Conserved_siteLIS1 homology motifInterproscan
IPR006595
all species →		DomainCTLH, C-terminal LisH motifInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR024977
all species →		DomainAnaphase-promoting complex subunit 4-like, WD40 domainInterproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR040067
all species →		FamilyWD repeat-containing protein 47Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19863
all species →		NEMITIN (NEURONAL ENRICHED MAP INTERACTING PROTEIN) HOMOLOGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K24746WDR47; WD repeat-containing protein 47-Domain-containing proteins not elsewhere classifiedko04990deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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