Gene detail

Detailed information of ANN02379-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:43744948...43759131
NR annotation: RMX49195.1, hypothetical protein pdam_00005861 [Pocillopora damicornis]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN02379-RA

ATGCGCAGTAACAAAAAGGGTTACATTATGGCGTACACTTGGGCAGTAGTGGTGGCGGGTATTTCATTTCTTGTATACTACACCCAGCTTCCTTGGGTCCTGTTCCCTGTTCTTTTGTTTGTCGTTTTTCTGGCTTCAAGAGGGAAGTCTTTTCCTCGAGTGTTCTTTCGGACAGTGCTTCGTGATTTATGGTTAATTTACCGATTTTCTACCATAATGATCCGAAAACGAAAACATGCAAAAAACAACGATGTAGTGGCAGATATTTTTCGGCAAACGGTCTCCAAACATCCACGAAAGGCTGCATTCATCTTTGAACAGGAAACATGGACATTTCAAGATGTTGAAGATTACTCCAACAGAATTGCAAATTACTTCAACTCACAGGGTTACAAGAAGGGAGATGTGGTGGCGCTCTTTCTTGAATCCTGTCCTGAGTTTGTTTGTATTTGGCTGGGGCTGTCTAAACTTGGTGTAATCACTGCACTTATCAACACCAACCTTAGACTTGATTCGTTGTGGCATTGTGTATCTGTGGCAGATGCAAGAGCTGTAATATTTGGAAGTGGCCTCTCAGGTGCCGTGAAGGACATTCGTGGTCACATGGCAGGCAATATACAGCTGTATTACTTTGGAACCAATCTTTGTTCAAACATAACAGCTTCAAGCTTGATCAGAGAACTGGAAAGAAGTTCTTTAAAACCACCAGCTGTTGATTACACAAAGTCAATCTATGGCTCACTGAAGTCTATAGTTTTCGTTCGAGTGTGTTTGGATCGTCGCACGTTTTACATGGCTGCTGTTAGTACTACCGCTAAAATCCCCTCGCCGTTGAATCTTTCCGACCGTTTGCATCAAGGAGAAAATTGGAAATCATTTCGTCGTGAATGGAAGTTTTACGAGCTAGCGGCTGGCATTCACAAGAAAGCACAGGAAGTTCGGGTGGCTTCGTTGTTAAATGTGATCGGCAAAGAAGGAATGGACATGTACGAAACCTTTCAATGGGGAAACTCGTCGGACGCTCTAAAAATTGACAAGGTCTTGGAAAAGTTCGAGGAGCGTTGTGTCCCTGCACGTAACGAAACCTACGAAAGATATGTTTTCTTCAAACGTGAGCAATGGTCAAATGAATCGCTTGATAGTTACATAACTGCATTGATGAAGCTTTCAGAATCATGTGGTTTTGGCGCACTTCGTGAATCGCTCGTTCGCGACCGGCTAATTCTTGGTGTGAAGGATGACAGAGTTCGTGAAAAGCTTCTTGGAAAGCGAGACCTCGACCTAGATAAAGCCATAGAAACTATCAAAGCAAGTCAAGTTACTCACTCGCGAGCGACAGAAATCTCAGAAGAATTTTCAGCTAACGAAGATATTAATGCAGTGGGGCAAAGGTCGAAACCCAAGCGCGGGAAAGTTCCGCGCCGCAAACCTCCCAGCAAGGACCCTCCCAAGATTAAAGAGTGTTTGTTTTGTGGTGGTACACATGCACTGGAAAGGAAATTGTGTCCAGCTTCAGGTCAGAAATGCAAGAAGTGTGGTAAAGAAGGCCATTTTGCAGTCAAGTGCCGAAGCAAGTCTGAAGATGCAAAAGTTCACATGGTCGAACAAGAAGAAGTCTTTTACGTTCATAGTGTCAGTGGTAAAGATCAAGCTCTTGTTTCGCTTACTTTGAATGGTTCAGCATCAGTAACCTTTCAAATTGACACTGGTTCTTCTGCAAATATCTTGCCACTACAGGATTACATCAGGGCAACAAAAGATTACAGTAAAGCTAACATTGTTCCTAAAGACATCACACTAGTTATGCACGATCGCTCAAAGCGAAAGGCTCTTGGTTTTGCAAGGCTGAAAGTGGCACATAAAGGTAGCAAGCATGAACTTAACTTTGTTATTGTTGATCAAGATGTTACTCCTTTGCTTGGTTTGAAGTCATCCCAAGGCATGGGTCTTGTGAAGATTATGGTACCTGGTGTTGATACCTCTGTCAATAATGTAGTTGCAGCTCCAAAGAAAGAGTCAGCAGTTTCTGAGAATGTCACAAAGGATCCTCTACTACTCCCTTTTGCTGATGTGTTTCAAGGTATTGGCTGTTTACCTGGAGAATACAGCATTGAGCTCAGCAAGGATGTGCAACCTGTAGTTCACCCGCCACGAAGAGTGCCTGTTCCTAAGAAGGAAGCAATGAAGGCAGAGCTTGACAGGATGGTTGCTGACAAGATAGTTACTCCTGTTACTGAGCCAACTGATTGGGTATCCAGTGTCCTAGCAGTGCCCAAGAAGGATGGATCAGTTCGCATCTGTTTGGATCCTAAAGATTTGAACACTGCAATTAAGCGCTCTCACTATCCCTTACCGACAGTGGAAGATGTCACCTCTCGTCTCACCAATGCCAAGGTTTTCAGTGTTTTGGATGCCAAAAGTGGTTTTTGGCAAGTTAAACTGACTGAGAACTCCAGTTACCTTACCACATTTAATACCCCTTTTGGCCGTTTCCGTTGGCTGAGGATGCCATTCGGCATTAGTTCTGCGCCTGAGATATGGCAGCGGAAGATGCATGAAGCCATTGAGGGTCTGCACGGAGTTGAAGTAATTGCTGATGATTTCCTTGTTTGTGGATTTGGAGACACTGTAGATGAAGCAGTGAAGAATCATGATCAGAATTTAACCGCCTTTCTACAAAGATGCCGTGAGTTGAATCTAACACTTAATTTTCAGAAGATTAAGCTTCGCCTATCACGTGTACCATTCATGGGCCATTTACTCTCAGCGGATGGTGTTGTGACTGACCCAAACAAAGTTCGTGCCATACGTGACATGCCTGTCCCGACAGATGTCAAATCCTTGAAAAGATTTCTTGGCATGGTTACTTACCTAGCAAAGTTCTTACCGAATCTGTCAAGTTTCTGCGAGCCATTAAAGTTGTTGAGTTGTGTTGATGCTCGGTGTCCTTACGTTGATCGTAACAGGACAGTACTATTGTTACTGCGCATATGTTCTGCGCATCTCATGATACTCCGGTTTCCTGTGGGTGAATTGCCTACTAATACAAGGATATTTTTGCACGGTTTAAAAAGTATACAGGGCAAACAGAACTTAGCAAGTGCTCTTGATGTGTTGTTATATATGTACACATCAGGAACAACTGGATATCCCAAGCCTGCTATTATTACCAATGAAAAGTTCTTTGGATTGGGCACAGTTTCTGCTGTTTTCTCCATCACTCCAGAGGACATAATTTACTGTACATTGCCATTATATCACGGTGCTGGAGGCAGCGTAAGCGTTGGATCTTGCCTGCTCAGGGGCATCACGGTGGTGTTAAGAAAAAAATTCTCTGCCAGCAAATTTTGGGATGACTGCATTGAAAGCAAGGCAACGGTTGTTCAGTACATCGGTGAGCTTTGCCGCTATCTTTTGGCTCAACCTCGTCATCCTTCTGAGAAGCAGCATTCGGTGCGTATTGCAATTGGCAATGGATTGAGGCCTCAAATATGGCGCGAGTTCCAGTCTCGTTTTGGTATCAGCAAAATTGGAGAATATTATGGCTCAACCGAAGGAAATGTAGCATTCTTCAACATTGACAACACACCGGGTGCCTGTGGTTTTGTATCAGTTATTTTACTAGGATTATTTCCATTTAAGTTCATTAAAGTGGATCCTGTGACTGGCGATTTACTCAGAGGTGATGATGGTCTGGCTATCCTTGCACAGCCCGGAGAGCCTGGTCTTGCAGTTGGAAAGATAATAAAAGCGAACTCATTTAACTACAAATTTTCCGGATATCTGAATTCAAGGGAAACATCGAAGAAAATTGGCCATAACATTTTCAAGCAAGGAGACTCCTATTTCCTCACTGGTGACCTCCTTGTCACAGATGAGTATGGCTATGTTTATTTTGTTGACCGCATTGGGGACACATTCCGCTGGCAAGGAGAGAATGTGTCCACAGCTGAAGTCGAAGCAATGATGAGTAAGCTACTGGGTCTGCGTGATGTTGTTGTTTATGGTGTCAGAGTTCCAGGCACTGAAGGAAGGGCAGGGATGGCTGCCATTGTTGATCCTGACAACACAGGTATAGATTTGAGCGCACTCACCCAAGGATTAAAAGAGCAACTGCCACGTTATGCTCGTCCTATTTTCCTGAGAATTGTTGACAGTGTAACTGTTACAGGAACATTCAAACTTCAGAAGAACAAGTTGCGAGAAGAGGGATTTGACGTAGGAGCCGTACAAGATAAACTGTTTTATTACGACGCCAAAGCAGGGAAGTATCTTGTGCTGGATGAAGACAAATATGCTAAAATTAACTCCGGTGAAATCCGAATGTAG

Transcript

ANN02379-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4R3Y4	Long-chain fatty acid transport protein 4 OS=Macaca fascicularis OX=9541 GN=SLC27A4 PE=2 SV=2
Q91VE0	Long-chain fatty acid transport protein 4 OS=Mus musculus OX=10090 GN=Slc27a4 PE=1 SV=1
Q5RDY4	Long-chain fatty acid transport protein 4 OS=Pongo abelii OX=9601 GN=SLC27A4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001528 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13193 all species →	AMP-binding_C	AMP-binding enzyme C-terminal domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042099 all species →	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR020845 all species →	Conserved_site	AMP-binding, conserved site	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR045851 all species →	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan
IPR025110 all species →	Domain	AMP-binding enzyme, C-terminal domain	Interproscan
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43107 all species →	LONG-CHAIN FATTY ACID TRANSPORT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004467 all species →	Molecular Function	long-chain fatty acid-CoA ligase activity	Interproscan
GO:0005324 all species →	Molecular Function	long-chain fatty acid transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08745	SLC27A1_4, FATP1_4; solute carrier family 27 (fatty acid transporter), member 1/4	EC:6.2.1.-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.