Gene detail

Detailed information of ANN02408-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:44096316...44101674
NR annotation: XP_044173378.1, short transient receptor potential channel 4-like isoform X3 [Acropora millepora]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN02408-RA

ATGTCTACAGGAATTGAAGCGACGCCAGAATCAATGGAAGCGCCAGACATTTTCCTGCAAGAACTAACAGTAGATGGAGATTGTTCACCAAAAACTAATTTACAGCGAAAGCTTTTCGAAGCCGTGAGGAAAGGAGATTTGGAGAAAGTAAGGAGCCTTTTCCAACTAAAATGCGACCTGAACTGTGTGAACAGTTCTGGCAAAACACTTTTACAAGTCGCGGTAGACCTGAAGGATGTATCCATTCGAGACGAAATGATTAGAGCTTTACTGAGCGACGGGGCTGGTTTGGAGTTCGCGTTGCTGCATGCGGTACGAGACAGTAACGCGAAAACGGTGGAAATACTGCTGTTATTTCACAACCCAGCATCCCAAGCATCACCTCGACCTCTATCTGCATTAAAAGGTCAAGGATATATCACACCATTGATTCTTGCGGCATGGTTGCAGAATTTCCAAATTGTCAAGCTCTTGTTGAGCCACGGATTCACCGTCAGCGATCCAAAGAAAGCCCACGGGTCATTCGATTCAGACGCAATGGCCAGCGAAAAACTGGGACCCGCCATGTACCGCTTAAATGGATATCGAGCACTCGCCAGTCCCGTTTACATTGCAGCGTGCTTTCTCCAAAACATGCAGGGTCCCGCGATGGACCCCGTCCATCGTGCATGCGTCCTGAACAAGGAACTCGGTGACATGGCTGAGCAAGAATACGAATTCAGGGAAGAGTATTTACAGCTCAGTGACGGGTGTAAAGAGTTTGCTGTAGCACTGCTGAATGAATGCCGCTCGATGGAAGAGATAAGATGCGTTATGGAGGTGGAAGGTGGAAGTAAAATAATACTTCCTGGCAGGCAGGGAAAATGCTTGAAGCTCCTGGAGTTTGCTATCGCTACAAGGAATGAAAAGTTCGTTTGTCATCCCTACAGCCAGTTGGTGTTAAACTCACAAGTCTACAGAGATGTTCCCTTCCTGGAGAAAAGTTCTTGGAAACAGGCTCTGCTGCTACTTCTGTCGTCTGTTTTGTTTCCTTTGTTGTTCTTGGTTTGGTTCGTTTTTGACAACTGCTGTCCCAGTCACGAGGTCGCCAGAATGTTTCACGCTCCTTGTGTAAAATTTCTCATCCACTGTGGTTCCTACCAAGGCTTTCTTTTCTTGCTTGCTTTCACGTCGTTCCATTCTCAGAGTGATTTTCTGGAGTACAGCATTCTTGATGGTGTAGTTCTGTTGTTCGTCATTGGACTGCTAGTGGACGTCATTAAAGACTTTTACCAACAAGGAAGAGTCCGGTTCTGTTCAAACCATTGGAACTTCTTGGCTGCAGCTTCAGTGACGTCATTTGCTCTTCACTACGTCATTTGGTGGGCAGGCCGTGCATCGCTTACAGAGAAAGTGCAGAAGTGGGAAACACACGTAAAAGATGGAGGTTACACAGTCATATTGGTTTCCTATTGTTTCTTCGCCGTAGGAATCCTTCTGGCATTTGCCCAGAACCTCTCTTTCATTCAAGCCAACTCCACCACCGGTCCACTACTGCATGCATTCATACAGATGCTGATAGATGTGGCAAAGTTTTTCCTGTATTTTGTTTTCGTATTTCTGGCATTTGCCGTGAGCTTCACGAAGCTGTACCTGCAGTATGACAAGGCCAGACGGCACTTCAAATTGAATGAAGCAGGAACGAACGAAACTGATCCTCTACATCTTGAAAGATTTGGGAATAGTATGAACACGATCTTTTGGTCGCTGTTCGGTGAGATAGACGAAAGTAGTTTTCAACTTGACGAAAATGGTTACGGTGCTATATGGAAAACAGGCATGGTGTTATTTGGTGCGTTCAACATAGTAGCGGTTCTTGTGGCGCTCAACATGCTGATCGCAATACTGAATGATTCGTACATTCGGATAACGGAAAACTTGGATACCGAGTGGAAATTCACCAGAACAAAGCTGTGGTTAAGCTGGATTTACAAGAAAGGCGTTATTCCCCCGCCATTTAATATCCTGTATCTGTTGCTTCCAGTCTTCTGGGTTGTCAAACGTCTTTTCACAGCCTTTTGTCCTGAATCTGACTTGAGAATTGAAGTGATTCGCCATCTTATCCTGAGGTACCTGGCCAAGAAGTCTTGCCATTCAGAGACTGGTACCGAGTCAAGTGACTCAGAGCAAGAGAACGAGAACGTAAATGAGAACGAGGCTAAAACGTCACTTGCAAACAACAACCAGAGCGCCAGTGAGCCAAACAAAATTGGAAACAAAGAAACACCTTTGTAG

Transcript

ANN02408-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QUQ5	Short transient receptor potential channel 4 OS=Mus musculus OX=10090 GN=Trpc4 PE=1 SV=1
Q9UBN4	Short transient receptor potential channel 4 OS=Homo sapiens OX=9606 GN=TRPC4 PE=1 SV=1
O35119	Short transient receptor potential channel 4 OS=Rattus norvegicus OX=10116 GN=Trpc4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001804 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan
PF08344 all species →	TRP_2	Transient receptor ion channel II	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002153 all species →	Family	Transient receptor potential channel, canonical	Interproscan
IPR013555 all species →	Domain	Transient receptor ion channel domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10117 all species →	TRANSIENT RECEPTOR POTENTIAL CHANNEL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005262 all species →	Molecular Function	calcium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0070588 all species →	Biological Process	calcium ion transmembrane transport	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015279 all species →	Molecular Function	store-operated calcium channel activity	Interproscan
GO:0034703 all species →	Cellular Component	cation channel complex	Interproscan
GO:0051480 all species →	Biological Process	regulation of cytosolic calcium ion concentration	Interproscan
GO:0070679 all species →	Molecular Function	inositol 1,4,5 trisphosphate binding	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04967	TRPC4; transient receptor potential cation channel subfamily C member 4	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.