Gene detail

Detailed information of ANN02665-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:49076195...49079389
NR annotation: XP_027059291.1, uncharacterized protein LOC113685907 isoform X6 [Pocillopora damicornis]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WV82	Toll-like receptor 4 OS=Cricetulus griseus OX=10029 GN=TLR4 PE=2 SV=1
Q9GL65	Toll-like receptor 4 OS=Bos taurus OX=9913 GN=TLR4 PE=1 SV=2
Q8SPE8	Toll-like receptor 4 OS=Gorilla gorilla gorilla OX=9595 GN=TLR4 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000113 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13676 all species →	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR017241 all species →	Family	Toll-like receptor	Interproscan
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24365 all species →	TOLL-LIKE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0001530 all species →	Molecular Function	lipopolysaccharide binding	Interproscan
GO:0001875 all species →	Molecular Function	lipopolysaccharide immune receptor activity	Interproscan
GO:0002224 all species →	Biological Process	toll-like receptor signaling pathway	Interproscan
GO:0002755 all species →	Biological Process	MyD88-dependent toll-like receptor signaling pathway	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006954 all species →	Biological Process	inflammatory response	Interproscan
GO:0006955 all species →	Biological Process	immune response	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0032497 all species →	Biological Process	detection of lipopolysaccharide	Interproscan
GO:0034142 all species →	Biological Process	toll-like receptor 4 signaling pathway	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0050829 all species →	Biological Process	defense response to Gram-negative bacterium	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05173	IL18R1, IL1RRP, CD218a; interleukin 18 receptor 1	-	CD molecules	ko04090	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.