Gene detail

Detailed information of ANN02681-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:49485615...49513504
NR annotation: CAH3042803.1, unnamed protein product [Porites lobata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN02681-RA

ATGACTTCGGTTTGGAAGAGGCTACAACGTGTAGGGAAAAAGGCGTCGAAATTCCAGTTCACTGCCTTATATCAGTCACTTACTGTTGAGTGTGTTCGAGGTGGAAAATGGCAACCCAACAAACTTGTTGTGGTATGGACAAGAAGGAAGAGAAGGAAACTTGCTAAGCCAGTGTCGTGGCAGCCTGGAATCAGCAATCCATTTAGGGGTATTATAGTATGGCCTGAACCTGAGCCTGTCGACATTACAGTCACCCTGTATAAGGATTCCAAACCAGACAGTGTGTTTGAAGATAAGGAGTGGACCTTTGTTATTGAAGATGAATCCCAAACTGGTAGAAGGAAGGCTATAGCAACAGGAGTAATCAACATGGTTGATTACGTCAGTGTAGAGACTCGAGCCTTTGATATCACACTAACCTTGAAGGTGGCTAGTAAGAAACTGGTGTCAGCTTCCCTTGAATTTACATTGTCCTGTGTATTGATCAAAGAGGGCATGGCAACAGATGATGACATGATCAGTATTGGCAGCATGATGAGCTTGAACAATCATGATAGTTTCTACTTGGATGATGACGATGACATGGAAGTAGCGCCTTCACCGCGATTACGACACAAAAGAAACTTGTCCTCCGGCAATGTTAAGTTATCACCAGTCACAAAACTACAGGAACTAACTGATGGCAAAACTGAGTCACCAACTGCATCTCCTGTTCCTGGTGGCAGAGGAAAGAAGAAGCATGACAGGAAGAGAGCCAAGTCTGCACTGGGAGAAAATGTTAAGACAATAATAACTGATATACAAAAAGGGGATGCGGCAAAAAGGTTAAGCACTGGTTCAGATGTTTCCTCAGAAATCTCAGATGGTCAGGAAGTCACAACAGACAAGAGTAAACAGGAATCTGAACTTATCAAATGGGCAAGATCACACACCAAAGGCTACCGTGGAGTGAAAGTTAAAAACATGACCACAAGCTGGCGAGATGGACTAGCATTTTGTGCCATATTGCACAGTTTTCATCCAGATAAAGTTGACTTTTCATCTCTTGATCCACACAATATCAAAGAAAACTGTAAACTGGCATTTACTGCATTTGAGAAGCTGGGTATTCCTCGGTTGCTGGACCCCACACAGATGATGTTCTCACCTGTACCAGACAAGCTGTCTGTGATGACCTATGTCTTCCAGATCAAGACTTACTTCAGTCGACCACCACCTCTTCCTCCCAGCCCTCTTAGCATCACAAAACCTGCACCACGATCTCGCCCCGCGCCGCCCCCACCTCAAGCGGTGGCAGCTGCAAAAGAGGGACCATTAGACATTGATGATGTGAATTTAGTTTGTGATTCATCAGATATCGACAGTAGAGGTCAGGGAAAGGGCAGGAGTGAGGAAGCTTTGAATCCATTTCTTGTTGACAACGAGGACATAGCAATGGATTCCACCGCCGAGGTGTCAACAGACGCTACTGCTACTGTTTTCAGTGATGCTAGTGAAGACAGAAGTAGTGGAAAAGTAGTGACAGACTTGTCAAGTACGAGCTCAGAAAGCAAAAGCTCGGTGCAGGGAAGTATTGACAAAGAAGGTGATGTACGTGCAAAAACTGTCATGAAACCGCCTCCTAAGCCCCCAAGGATGTTCGAGACAACTGGAAGCTCTAGTGTAGATACACAGACAAACACAAGTGACGCTGTGGATAAGAAAGACAAGAGTGAATCAGAAGGGTATAATCCATTTGACGAGGGCGAAAAGGAAGAAGTTGAAGTGGATAAAAAGACAACCACGCCCTCGAAAGTAAGGAGGCCTCCTCAAGGGTACAATCCTTTTGACGATGATGAAGGAGTGGACTCTCAGGAGAAAGCTGTAAATGATAAAGAAAATAAAGTTGGTTATAATCCATTCGACGAGGATGGTGACGATGAAGTTGTGACGCAGACCGAAACGGTTATAGATCAAAATACAGGGAAGAAGGAAAAAGCCAAAAAGAAAATTTCTTACCCTCATAATTTTAATCCATTTGAAGATGATGATGGTGGTGATTTAAAACCAAATGAACGTGCTAAAAGCTCGCGGAGAAATGAATCTAAAGATGGCAAGAGTGATAAGCAGTCTTCGTCAAAGGGTTTAAATCCTTTTGATGATGATGACGATGAAGGGGGCGTGAGTAATGAAGCGAGTCAAGTGAAGAGGAAATCAAGCTTGGAAAATAAAGAAAAACTTGGCCAAGCTGGGCAAACTGGAAGAGCTTCTCCCTCTAGCTTGACGAAACAACCGGTGAAAAAGAGGCAAGCCCCTCCTCCACCGGCTGTTCGTTCATCCGATGATCCGTGGACAGCAAGACTACCTGATGATGTCGTTGCTAGGCGTCGGCGAAGCTCCAGAGCATCGACGCCAGGGGGCACTGACCAACCATCGCCGCAAACCTCCCCCGCGAGACGAGGCCCCAAGAGAACCGCCCCTGCTCCTCCAAGGAGACCACCCCTTATTCCTACCTTTGACGAGTGGAAAAGTGACCGAGGTGTCACCGGTGATAACGACAGGCCAGCGGCTAGTCCCAGTGCGGAGAATTCACCAAGTAAAGCGGTATCTTCTGAAAAAGTCGATGAAACTCAGGAAACCGCAGCGCCAACTTCTGACGGCAGTGGCAGCAGATCACCGAAGGTTTCCAGTGGCGATGGAGCCAATCAGGCAGATATAAAGCTGCTTGCGCGTCAAGTGCTCATGGATGCACGCAAGAAAGCTGGGGCCAGCGGTGCGTTGCCTAGGGAACGAGTGGCGGAGATAGCCAAGACATCCAGAGGACCAACCGCTGATAAAGCGACCACGGGCTCCGTTGCAAGTGAGGGTGGTGCACAAGCTAAGGTGAAGACTGATGAGCAGGAGTCTTTGAGAAAGAAAGAGAATCTGAAGCTAAGAAAGGAAGAACTCCAAAGGAGAAGAAAGGCCAACGAGAAAGCCCAAAAGATGGTCCAGAATGCCATTGAGAAAGAAAAGGGTAAAAAGTTGGCATCTTCATCAGAAGGAACAGCGTTAGACAAACAAACACAGGACGCTTCTGGTGCAGCTGATGCTGGCAGCGACCAGAAACCTGTGAAAAACAAGAATTTACAGCATCGTCCTTTGAAGCGGAAACCGTCAACGGAAAAAGACGCTGCAACGTCACCACCGGATAAGACGGGTTTTAAAGAAAGTGAAGAACTACAGCGAATCCGGCAGATTTTAAATCAAGGGAAGAAGGAGAAAAAGCCGAGTGTCTCTGAAAATATTGAACAGGAAAATAGAACAGAAAAAGCGGAAAGTAAAAGGAAAACATCTGGCAGTAAATCGTCTCATGATTCGGCGGTGAATGGATTGTCGGACAGCTCAACACCTGCTCCGCCGCCGCGGTCAAAGACGCATGGACCCAATGCTGGCCTGCATGCCTATGTAGAGAGTAGAAAAATGAACTTTGAGATGTTTGAGGTGCCGCCTATTCGTACAACACAAAGCGATGAGGACGGAAATGAAGAAGAACGAAAAGGCACTAGTACTGATGGTGGAGACAAAACGGATGACCAGACTGAGAACAATGAGGAGACGTCTGTAGAGGTTGAGGAGCAAGAGTCCGAAGATCAAACGCGGGAGTTTCAGGACACTTTTGAATATGTTCGCCGAGAGCTGAAGTCACTTGAAGAACAGCAAGAAGCTCTGGACAAGGTTGGAGAAAAACTTGAAACTGAGCTGCGAAGAGCTATGGAATGCATAGGTTGCGAGGAAGAGCAAGAGAAACTCATGCAGGATTGGTTCTTGCTGGTAAACAAGAAAAACGAGCTGGTTAGAAGACAAGCTGAGCTGAATTTACTTAAGAACGAAGAGGACTTGGAAAGAAGCCATGACATGCTGCAGAGGGAGTTGCGAACGCTTGTGGAAATGGAGGATTGGCAGAAAACCGATGAACAAAGAGAACGGGAAGCGGAATTAATCAACCAATTGGTGTTAGTCGTGAACAAACGAGATCAGCTGGTGCAGTTTGAGGACTCACAACTTCAACAGGCCGAGAAAGATGCTCTTCACGTGCAGAAAGTGATTGCCACCGCGCGGATAGCGAGAGACAAGAACGAATGCGTTCTACAGTAG

Transcript

ANN02681-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q69ZW3	EH domain-binding protein 1 OS=Mus musculus OX=10090 GN=Ehbp1 PE=1 SV=3
Q8NDI1	EH domain-binding protein 1 OS=Homo sapiens OX=9606 GN=EHBP1 PE=1 SV=3
Q99MS7	EH domain-binding protein 1-like protein 1 OS=Mus musculus OX=10090 GN=Ehbp1l1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003451 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10358 all species →	NT-C2	N-terminal C2 in EEIG1 and EHBP1 proteins	Domain	Interproscan
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan
PF12130 all species →	bMERB_dom	Bivalent Mical/EHBP Rab binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR022735 all species →	Domain	bMERB domain	Interproscan
IPR050540 all species →	Family	F-actin Monooxygenase Mical	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR019448 all species →	Domain	NT-type C2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23167 all species →	CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25572	EHBP1; EH domain-binding protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.