Detailed information of ANN02833-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:52791636...52806105
NR annotation: CAH3148756.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9VE46High-affinity choline transporter 1 OS=Drosophila melanogaster OX=7227 GN=ChT PE=2 SV=2
Q9GZV3High affinity choline transporter 1 OS=Homo sapiens OX=9606 GN=SLC5A7 PE=1 SV=1
Q9JMD7High affinity choline transporter 1 OS=Rattus norvegicus OX=10116 GN=Slc5a7 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000264 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01410
all species →		COLFIFibrillar collagen C-terminal domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002181
all species →		DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR036056
all species →		Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR052244
all species →		FamilyHigh-affinity choline transporterInterproscan
IPR038377
all species →		Homologous_superfamilySodium/glucose symporter superfamilyInterproscan
IPR000885
all species →		DomainFibrillar collagen, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45897
all species →		HIGH-AFFINITY CHOLINE TRANSPORTER 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005307
all species →		Molecular Functioncholine:sodium symporter activityInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0008292
all species →		Biological Processacetylcholine biosynthetic processInterproscan
GO:0015871
all species →		Biological Processcholine transportInterproscan
GO:0005201
all species →		Molecular Functionextracellular matrix structural constituentInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN02833-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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