Gene detail

Detailed information of ANN02848-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:53057901...53062673
NR annotation: CAH3021505.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q15477	Superkiller complex protein 2 OS=Homo sapiens OX=9606 GN=SKIC2 PE=1 SV=3
Q6NZR5	Superkiller complex protein 2 OS=Mus musculus OX=10090 GN=Skic2 PE=2 SV=1
F4JAA5	DExH-box ATP-dependent RNA helicase DExH11 OS=Arabidopsis thaliana OX=3702 GN=SKI2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13234	MTR4_beta-barrel	Mtr4-like, beta-barrel domain	Domain	Interproscan
PF08148	DSHCT	DSHCT (NUC185) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025696	Domain	Exosome RNA helicase MTR4-like, beta-barrel domain	Interproscan
IPR050699	Family	RNA/DNA Helicase	Interproscan
IPR012961	Domain	ATP-dependent RNA helicase Ski2/MTR4, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12131	ATP-DEPENDENT RNA AND DNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0006401	Biological Process	RNA catabolic process	Interproscan
GO:0055087	Cellular Component	Ski complex	Interproscan
GO:0070478	Biological Process	nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay	Interproscan