Genomic Location: Scaffold_3__1_contigs__length_63507380:53309516...53331000
NR annotation: KAI4873603.1, hypothetical protein NFI96_001401 [Prochilodus magdalenae]
| CDS | |||||
| ANN02877-RA | |||||
| Transcript |
| ANN02877-RA |
| Protein |
| ANN02877-RA |
| Uniprot term | Description | ||||
|---|---|---|---|---|---|
| Q05B17 | WD repeat-containing protein 48 OS=Xenopus tropicalis OX=8364 GN=wdr48 PE=2 SV=1 | ||||
| Q8BH57 | WD repeat-containing protein 48 OS=Mus musculus OX=10090 GN=Wdr48 PE=1 SV=1 | ||||
| Q5F3K4 | WD repeat-containing protein 48 OS=Gallus gallus OX=9031 GN=WDR48 PE=2 SV=1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 adaptor Cullin RING|CDC20 |
| Ubiquitin Family | ULD|UFD|RAWUL |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|DWD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00078 | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF00400 | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| PF03372 | Exo_endo_phos | Endonuclease/Exonuclease/phosphatase family | Domain | Interproscan |
| PF11816 | DUF3337 | Domain of unknown function (DUF3337) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001680 | Repeat | WD40 repeat | Interproscan |
| IPR036322 | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR019775 | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR000477 | Domain | Reverse transcriptase domain | Interproscan |
| IPR043502 | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR036691 | Homologous_superfamily | Endonuclease/exonuclease/phosphatase superfamily | Interproscan |
| IPR015943 | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR020472 | Repeat | G-protein beta WD-40 repeat | Interproscan |
| IPR005135 | Domain | Endonuclease/exonuclease/phosphatase | Interproscan |
| IPR021772 | Family | WDR48/Bun107 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47027 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0003824 | Molecular Function | catalytic activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K15361 | WDR48, UAF1; WD repeat-containing protein 48 | - | DNA repair and recombination proteins | ko03400 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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