Detailed information of ANN02924-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:54190477...54199843
NR annotation: XP_027055657.1, E3 ubiquitin-protein ligase LRSAM1-like isoform X2 [Pocillopora damicornis]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q80ZI6E3 ubiquitin-protein ligase LRSAM1 OS=Mus musculus OX=10090 GN=Lrsam1 PE=1 SV=1
Q6UWE0E3 ubiquitin-protein ligase LRSAM1 OS=Homo sapiens OX=9606 GN=LRSAM1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003952 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00536
all species →		SAM_1SAM domain (Sterile alpha motif)DomainInterproscan
PF13920
all species →		zf-C3HC4_3Zinc finger, C3HC4 type (RING finger)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001660
all species →		DomainSterile alpha motif domainInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR051728
all species →		FamilyRING-FYVE domain-containing E3 ubiquitin-protein ligaseInterproscan
IPR013761
all species →		Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14879
all species →		CASPASE REGULATOR, RING FINGER DOMAIN-CONTAININGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN02924-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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