Gene detail

Detailed information of ANN03102-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:56384903...56393046
NR annotation: XP_031564035.1, uncharacterized protein LOC116299516 [Actinia tenebrosa]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN03102-RA

ATGTCGCGACAAGTTCTTCTCGCTCTGTCATTGTTGTTGATTTGTCAGGGCGCAGCTAGTGGTTTGAATAACAACGAAGGGAAAAAAGCAAAAGAAATGATGGATTCTCTCTCCAAAAAGCTGCACAACGATGTTAAGGAGCTCAAAGAAACCATCGAGGAGGCAAAAGAGAACATCAGCAAAATCGTCGACAGGCTCGTTATCGTGAAGAAAGTACAAGTTCTCCTCGCACAGCTCAACAACCAGCCGGTCCCAGGGAAGATGTGCGAGCACCGATACATTGTTCCTGATTTTCACTACAAGCAGGCTATACTAATACAGACGAAGGCAGCTCTGCCATCTCGCTACACAGCTACCGTGAAAGTGAATCACAAGGCACTGGTTGATGCAAATAAGGCTTCCTTAGATGGTGAAGATCTCCGAGTATTTTACCGACCCAACGACAACAGCTTGCCATACGAGATCGACCGAGTGGTCACTGATTTGTACACAACTGAAGCTAAAGTACAATTCAGGATCCAGAAGATGATTCCTGGCAATACAGTGGAAGGCAGTTCCTATGCTCTCGTGTTTGGTGGCAACAACGCAGAAAAAGCGATGGCTGATCCAAGAAACGTTTTCACCTTCTTCGAGGACTTTTCCAACACGACCCTGAGCAAGTGGGAGCAGGTTTGGGGTTTGTGGACTGTCAAGAATGGAGCGATTTTTGGCGAAACCGGAAAGTCATCTTTTGGATCAGCTGAAGTAGGCATATACTTGAAAGAAGGGGTTAATTGGAGGGACATTGAAGTGGAACTTGATCTCAAAGAGACGGGAAATGGCGACGTCTTTCCTGGACCTTTCCTACGAGTTCAGGAGTCCAGTATGCAACACACGACTGCCTGGTGGTTTGAATACTGGACAGACCACACAGAATGCACCATGAGGCCTTTCATCAACAACAGAGACGGTTCGTGGAAGTACAGATGCGAGCTACCGGAAAGGCTGGTCAAAAATAAGTGGTTCCATTTCAAGTATCGCGTATCTGGTGACCGATTTATGCAGTGGGCTAACAACACGGCAATACAGAATGTCACAGTGGGTAGTGAATGGATGATTCCTAAGGGTAGCATAGGATTGGGCTGCCATAGTATCTACAGTGGAAGCCCCTCTGGATGCAGGACCTTCTATGACAATATTAAGGTTCGTTTGTTGGTGGCGTCTGATCCCACTGTATCTACTGGAGACAGATGTCAGCTTACACATGAAATAAATATCAAGCTGCCGTTTGGAGAGAAAGAACACCCAGCCGATTCGTGTAAGCAGATCTATGAGTCCAAACTAGACGGCCAAAAGAAAGAAAGTGGCGTGTACTGGATCAAGACATCCCTGAAAGGCAGTGAGGCTGTCCAAACCTTCTGCGACATGGCCAGTGGCGGATGGACTCTGGTTGGAAAAATCAGTGGTTCGGTTGGAAACATCTACAGCAAATGGCTCATACAAAACCAGAACCCAGAACAACTGAAGTCGCCTGCAATGACCCGTGGAAAAACCGGATATTCTTGCTTAGATGCTCGTGTCCTGGCTGTAGAACACGCTTCCGAGGTCATGCTATCGAGTGCAGACAATTCCGAGGGAATAGGAAGCAAATGGGTTCTCTGGAAATTACCATCGGGCAGAGAAATCAACACTTGGTGGAAACACGGAGTTGGTCAGACTCGAGTACAAGCAGCAGGCACAAGCAAAGTTACCGTGAAAGCCTGGAATGGAGCCACCAAGGTCTGTTACCAAAATAAATACGGGATAATGCCGTTACAGCAACATGGTGGTTCGTACCCTTATGCATCATTCAATCAGCAAGGTAATACCCAGGTAAACGACTACTGCATGGCGGTAGGTGTACAGCGCGCGGGCTCAAACGCAGATGGATGGAGCCAAAATGCTAACGGGTATGACAGCCCCAACAGCAATTCTGATTGGTCCAACAGAAATTATAATCACCAGTCTCCTTTCGTCCTTGTCTGGCTCAAGTGA

Transcript

ANN03102-RA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001264 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01410 all species →	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan
PF06439 all species →	3keto-disac_hyd	3-keto-disaccharide hydrolase	Domain	Interproscan
PF10102 all species →	DUF2341	Domain of unknown function (DUF2341)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000885 all species →	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR010496 all species →	Domain	3-keto-disaccharide hydrolase	Interproscan
IPR018765 all species →	Domain	Domain of unknown function DUF2341	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16146 all species →	INTELECTIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0070492 all species →	Molecular Function	oligosaccharide binding	Interproscan
GO:0005201 all species →	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN03102-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.