Genomic Location: Scaffold_3__1_contigs__length_63507380:61507383...61594329
NR annotation: XP_020601420.1, E3 ubiquitin-protein ligase UBR4-like isoform X1 [Orbicella faveolata]
| CDS | |||||
| ANN03366-RA | |||||
| Transcript |
| ANN03366-RA |
| Protein |
| ANN03366-RA |
| Uniprot term | Description | ||||
|---|---|---|---|---|---|
| Q5T4S7 | E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens OX=9606 GN=UBR4 PE=1 SV=1 | ||||
| A2AN08 | E3 ubiquitin-protein ligase UBR4 OS=Mus musculus OX=10090 GN=Ubr4 PE=1 SV=1 | ||||
| Q2TL32 | E3 ubiquitin-protein ligase UBR4 OS=Rattus norvegicus OX=10116 GN=Ubr4 PE=1 SV=2 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 activity|UBR-box |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13764 | E3_UbLigase_R4 | E3 ubiquitin-protein ligase UBR4 | Family | Interproscan |
| PF02207 | zf-UBR | Putative zinc finger in N-recognin (UBR box) | Family | Interproscan |
| PF19423 | E3_UBR4_N | E3 ubiquitin-protein ligase UBR4 N-terminal | Domain | Interproscan |
| PF12012 | DUF3504 | Domain of unknown function (DUF3504) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003126 | Domain | Zinc finger, UBR-type | Interproscan |
| IPR025704 | Domain | E3 ubiquitin ligase UBR4, C-terminal | Interproscan |
| IPR013762 | Homologous_superfamily | Integrase-like, catalytic domain superfamily | Interproscan |
| IPR016024 | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR047509 | Domain | E3 ubiquitin-protein ligase UBR4-like, UBR-box | Interproscan |
| IPR036322 | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR003903 | Conserved_site | Ubiquitin interacting motif | Interproscan |
| IPR045841 | Domain | E3 ubiquitin-protein ligase UBR4, N-terminal | Interproscan |
| IPR021893 | Domain | Domain of unknown function DUF3504 | Interproscan |
| IPR045189 | Family | E3 ubiquitin ligase UBR4-like | Interproscan |
| IPR011010 | Homologous_superfamily | DNA breaking-rejoining enzyme, catalytic core | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21725 | E3 UBIQUITIN-PROTEIN LIGASE UBR4 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0006310 | Biological Process | DNA recombination | Interproscan |
| GO:0015074 | Biological Process | DNA integration | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K10691 | UBR4, ZUBR1; E3 ubiquitin-protein ligase UBR4 | EC:2.3.2.27 | Ubiquitin system | ko04121 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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