Detailed information of ANN03407-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:62272878...62273626
NR annotation: CAH3041964.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q92356Synaptobrevin homolog 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=syb1 PE=3 SV=1
Q32L97Vesicle-associated membrane protein 4 OS=Bos taurus OX=9913 GN=VAMP4 PE=2 SV=1
O75379Vesicle-associated membrane protein 4 OS=Homo sapiens OX=9606 GN=VAMP4 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001916 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00957
all species →		SynaptobrevinSynaptobrevinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR042855
all species →		Domainv-SNARE, coiled-coil homology domainInterproscan
IPR016444
all species →		FamilySynaptobrevin/Vesicle-associated membrane proteinInterproscan
IPR001388
all species →		FamilySynaptobrevin-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45701
all species →		SYNAPTOBREVIN FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005484
all species →		Molecular FunctionSNAP receptor activityInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0006906
all species →		Biological Processvesicle fusionInterproscan
GO:0019905
all species →		Molecular Functionsyntaxin bindingInterproscan
GO:0031201
all species →		Cellular ComponentSNARE complexInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0016192
all species →		Biological Processvesicle-mediated transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN03407-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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