Gene detail

Detailed information of ANN03444-RA in Leptoseris scabra

Genomic Location: Scaffold_3__1_contigs__length_63507380:62945387...62957213
NR annotation: XP_044164821.1, uncharacterized protein LOC114962432 [Acropora millepora]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN03444-RA

ATGGCAACTACTGTTATAGAGGTAATCAACTTAAAGAAGAATTCTAAGAGGTTTAACCCTTCAACGATAAGATCATTTAGTAGAGGGCAGGCATATGAAAATCGGGTTCCATTAACAAGATATCCTGGAAAGAATCGAATTGTCCGTCAAATCACCCCAAAGGAAGTAGCAGACCCATTTCAGCTCTCTTTCATTCCACCAGAAAAATACCTGACACAGTGGAAAGATGAAATCACCAAAAAGCAACTCGCCAAGTGTGGTCATTTCCTTTATGCTGAAAATTCACTCGGTCGGTTTGATATCCCAGCAATACAAGACATGCTTAGGTTACATTCTGCAAAAGCAATAAAAGAGGATGTTGAGAAAGAGTTAAAGTGGTTTTCAGCAAACTATGACATCCCTGACACAGTTCAACAGCCACCACCTTCTTCTATCAGCAAGTTTCAACACTTGTTGTATTCAGTAAGGTATGGAGAACTGCTGTCGCGGTATGCCATGTCCCCAAAAGAGCTTTCAATGGTCTGTGTCAAGCGCTGGGTTTCAGGTGACCACATCAGTTGGCTCATGAAAGTTCTCAACAATCAGTCCGATGTGTACTGCCTATATATTAATGATTTACTCCGAAGAGATCCGTCTACCTTACGTCGCTTCTCCAATGGATCATTGAAACCTGAAAAGCTGCTCTTTGCCGTCAATGTTGGTCGCTCTGCAAATGGCTGTACTTATCTTGGTACTGACGAACAGCATGGTGCCCACTGGACCATATGCCTTGTGGACATACGCGAAAAAATAATTATATATGGCGACTCACTGGCATGGCCAGTTCCTGATGGTCTCATTGAAAAGTTGCACTCATTCATAACGGTTTGTGATGCAGATTTTCATGAATTTTCCATACAAGTTTGTCACGATCCAAGAAGTATCTCTTCTAATGGTAGACACTGCTGTGGCACATCATGTGCTAAACTATACCCTTTGCAGACATGCATGAATATCTGCGGTATTGTTGTCATGGTAATGGCTGCAATTGCTTGCTTCAACCCAAATCTTTTTTCATTATTGTCATGTGTTGATGAAATGAAAATCTCACAGCTGCCACAAATTTTCCTCACCACACCCTCTAAATACAGTGGCTACCTTCGCAGGGTGGTTGCAGCCTGGTTTGCTGACAACACTATTAATGCAGCATATGTTGTCCCACATAGCCATGTTGCTGAACCTAATTCAACTGCAACCACCCAAGCCAGATCTGACCAATCACCGGCTGTTGATAAGGCCAGTTTTGAAGAACTGCCAGCAACTCCTGATAGAGCCACAGCTGATGATATCAGTTATGACGAACCACCAGCTACTCCTGACAGAGCCACCACTGACCAGGCCACTGTGAAACAGCCATCAGCTACACCTGACAGAGCTACCACTGACCAGGCCACTGTGAAACAGCCGTCAGCTACTCCTGACAGAGCTACCACTGACCAGGCCACTGTGAAACAGCCATCAGCTTCACCTGACAGAGCTACCACTGACCAGGCCACTGTGAAACAGCCATCAGCTTCTCCTGACAGAGCTACCACTGACCAGGCCACTGTGAAACAGCCATCAGCTACACCTGACAGAGCTACCACTGACCAGGCCACTGTTAAACAGCCATCAGCTTCTCCTGACAGAGCTACCACTGACCAGGCCACTGTGAAACAGCCATCAGCTACACCTGACAGAGCTACCACTGACCAGGCTACTGTTAAACAGCCATCAGCTTCTCCTGACAGAGCCACCACTGACCAGGCCACTGTGAAACAGCCATCAGCTACACCTGACAGAGCTACCACTGACCAGGCCACTGTTAAACAGCCATCAGCTTCTCCTGACAGAGCTACCACTGACCAGGCCACTGTGAAACAGCCATCAGCTTCTCCTGACAGAGCCACCACTGACCAGGCCACTGTGAAACAGCCATCAGCTACACCTGACAGAGCTACCACTGACCAGGCTACTGTTAAACAGCCATCAGCTTCTCCTGACAGAGCCACCACTGACCAGGCCACTGTGAAACAGCCATCAGCTACACCTGACAGAGCTACCACTGACCAGGCTACTGTTAAACAGCCATCAGCTTCTCCTGACAGAGCCACCACTGACCAGGCCACTGTCCAATACACTAACCAGGTCACCGAGGAGGAAGGGTCCAATACGAATGATGCTCCTGTAAAAAGTAAAAGATATGAATGCAATTATTGCCACTCTGTCTTTTCCCGTAATTCGTCTTTAAAAAGGCATTTAGGGCGGCGTCACCCAAATGAAAGAATAGAACTGAATGGACCTTGTCGATGCCAAAACTGTGCATTCCAGTGTCACAAAATATTGGACCTGAGAAAACATCTGTCTGAGGCGCACAACCTACAGTTTGAAACCAAGACAGTGTATCTGGACAATAATGCAGCATTTGAGGAATGGAAACAAAAGCTGGAGGAAGATGAAAAGTGTTCCTTCATCAAAACCACTGGCAGTAAGGGAAACACCCAATACTACCAGTGTAACAGGGGTGGTATTTACAAGCCCAAGGGAACAGGAAAAAGGCGCACCAAATCACAGGGATCCTGCAAGATACAGAACAATTGCACTGCAACCTTGAAAGCAACGAAGTTAGATGGAGTTAGATGGATGGTTGATGCATGCATTACTCATTATGGGCATGAGAAAGAGCTGCAACACACAAGGCTGCCACTGAGTAAGAAGCTCGAAATAGCAGCCTTGTTACAGCAAGGGGTGAATAGAGACAGGATTTTAGGTGACATAAGAGAAGAGGGGATTGGCAGTGAAGAGTTCAAACGCCACCACTTAACTGACAAAAAAGACCTGTCCAATATCACCCGAGCTTTTGGTTTGGCAGATGTACAAAGAAGTACTAACGATCAAGAAAGTGTGCGTGCGTGGATAGAGGAATGGAGAACAAGTCCAAACAATCCTGTTCTCTTTTATAAATTACAAGGTGAAGATCCTGGCGATGACTCAGGTCTACTGAAGGAGGACTTTATGATCGTCATCCAAACACCCTTTCAAAAAAATATGGCCCAGAAGTTTGCATCCAAGGGTGTTTGCATTGACTCCACGCATGGCACCACTGGGTATGACTTCCTCCTGACAACAGTCATGGTAATGGATGAATGTGGAGAGGGTGTACCTATAGCATGGTGCATGTCCAACCATGAGGATTTTACACACATGTGTATCTTCTTCAAACAGTTGAAACAAAATTGTGGAACTTTGTTGCCTCAATGGGTTATGAGTGATACTGCCAGCCAGTTTTTCAACGCCTGGATCGGGATAATGGGGGGCAAGCCCATCAGACTGCTTTGTACATGGCACGTGGATCGGGCGTGGCAAGATGAACTACGAGCAAAGGTAAAGGACACTGTGGTTGCCGCTGAAATTTATAAAATGCTTCGAACTGTCCTACAAGAAACAAACACTGAGGACTTTGAAGACAAGTTGACTAAGATGTTGCAATACCTTCCATCTGCAAGTCCTTCATTCAGTGCCTATTTCGAACGAGAATGGGTGACCAAAAAGGAGCTGTGGGCTTATTGCCATAGGGCTGGCATGGGAATCAACACCAACATGCTAGTTGAGGCATTTCACCGGGTATTCAAGTACAATTATTTAAAGGGGAAGTTTAACAAGAGGGTTGACACTTGCTTGTTCAACTTACTTAAATTTGTTAGAGACAAGTCCTTTGAAAGGCTTATCAAGCTGACAAAGGGGAAATGCCACTACAAATTGAAGGTTATTCAAGACAGACATGGTAAGAGCAAAGGGATGAGTTATAAGCTGATTAACAAAGTGGGTGAGTCTAAGTGGACTGTTCAATCTGAAGATACCCAAAGTACCTACACTGTGACCCAACTATTGGAAGCTTGCAAAGACCCAAGCTGTGACTTGAAATGCTTGGAATGTAACATCTGCATTCATCAGTACATCTGCAGCTGTCCTGACAACCTTATCCAAAGTACTATATGCAAACATGTCCACCATGTCCAACAATTTCTGTTAAGAATGTCACTCTCTAATGACAAATGTCATGACACTATGGCAACCAAATCAAATGACACTGAGAGATTCAATTATGTTGAGCAAGAATTGAGTGATCTCACTGAATTCATTAATCAGAGTGACAACCACTGTGACCTGGCTACCTGCAGGGAACGTGTGCGAGGGAAATTGCTTTCACTGCTTGCACAATTAGAGACCTGTGAGGATAAACTTGCCTTGCAAGAACTTCAGAAGCATTTAAATGCTGGTCAAAGCATATTTACTTCTCTCCAAAAGAGAAAGCCTCTCAAAGAGTTAAAAGTCACCTCAAAAGCTACAGCAAACAAGAAAATTGAGACACAGCCCCGATTCTATTCCACAAAGAAAAAGAGGAAACGCAAGAGCAACATGCGCTTCGCTAAACCAACTAAAGAAGAAGTGCAAGTGCTATTTGAGAATTTGGAAAGGGCAGATGACCTCTCAACTACAGAACTTACTGGTGACCTTGACTGCATGCTTCAATGGTTTGGAATTAATGAAACTGCAAAGAAAAGAGTGAGTACATTTGGCACAGTATTCTCTGAAGAAGACATTACTTTTGATGAGGACCATCCCCCAGGAGAAGCATTAGACTCTGACCTGAGTAAAATAAAACATCTTTTTACGCATGATGCATGGGTCATGATAAATAAGTCAATGGAAAGCCTTAACAGTGCCTGGAGATGTGAAACATGTCAAACTTCCTCTTATCAAAACATGATTATGTGTGAGGGCTGCTACTGCTGGCATCATTGGACATGTGCAAAGATAATTGCAAGACATACTCCAGATGAATGGTACTGTGCGAAGTGTTCAAACAAGGAACCTCACATCAGGTTGCGCGCATTGCCGACAGGAATAGCACCGAGTCAGGAAGTTGCTGAAAAAGTAAATATTGAAAGGAAAGTGATCAAGAACAAATACGTGAACGTTAATATCGATTGTGAATCACTGGTTTCATCGGTAATGAGTCGCGAGAGGCCGGTGCAATTCCTGTGTTTAGCCGCAAGTGTGAAATCGAGGAGGACAAGATCGTTTACCATGACTAAGTCCGTGAGAGCTCAGTGTTTTCTGTTATTTCGGGAATCTGAAGTGGTGTGTCAGAATTGCATCAAAGAGGAAAACGGAGGAAAGACGAGGTTGAGGTATCAGGGCTCCAGGGAGGACCAAAAGTTGAAAAGGAGAAAGTGTTTCTTCATGTCAGTCCCTATTTAA

Transcript

ANN03444-RA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000415 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02892 all species →	zf-BED	BED zinc finger	Domain	Interproscan
PF21056 all species →	ZSWIM1-3_RNaseH-like	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR007527 all species →	Domain	Zinc finger, SWIM-type	Interproscan
IPR052797 all species →	Family	Regulatory Factors in Gene Expression and Cell Death	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR003656 all species →	Domain	Zinc finger, BED-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR048324 all species →	Domain	ZSWIM1/3, RNaseH-like domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33936 all species →	PROTEIN CBG17840	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN03444-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.