Detailed information of ANN03725-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:3332473...3339940
NR annotation: KAJ7385591.1, WD repeat-containing protein 54 [Desmophyllum pertusum]
Species abbreviation LSCAB · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9R0D8WD repeat-containing protein 54 OS=Mus musculus OX=10090 GN=Wdr54 PE=1 SV=1
D3ZX63WD repeat domain 54 OS=Rattus norvegicus OX=10116 GN=Wdr54 PE=1 SV=1
Q9H977WD repeat-containing protein 54 OS=Homo sapiens OX=9606 GN=WDR54 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008433 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21031
all species →		WDR54WDR54RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR049546
all species →		RepeatWD repeat-containing protein 54-like beta-propellerInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR050630
all species →		FamilyWD repeat Echinoderm Microtubule-associated Protein-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13720
all species →		WD-40 REPEAT PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K24749WDR54; WD repeat-containing protein 54-Domain-containing proteins not elsewhere classifiedko04990deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP