Gene detail

Detailed information of ANN03755-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:3799821...3813459
NR annotation: CAH3016467.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN03755-RA

ATGTACATTGGCATGTGTAGCAGGGCTGAGATTCTCTTCTCTTTTGCTGTGACATTTTTAGGGGCAGGTCAAGACGAAATAAGATCCAGTTACAAACGTCTTGCTTTGAGGTGGCATCCTGACAAACATAACAACAGCGTGGAAGCAACTCAAAAATTCCAAGAAGTGTCGTCAGCATACAAACGACTAACAAGTGAGGACTCGGATGATGAAATCAACTTGACTGCCGCTGACATGTTTGACCTATTTGCCCACATTTTCTTCCACCGTAATGGAATGTTTAATTGCTGCCCTGGAATGTACGACTCGGATGACAGTTACTACAGTGATGATGACGATGACGAGGATGAAGTGGATGATGAAATTCTTCACAGTATAGCACGCAGTTTTAGGAGAAAATATGAAAGAAAAACAACTGATAAAGCCGGACGACCTGCTCATAACTTATCAGAGGCGGAAGCCATGAAAAATGCAAATGAACTCATAGAAGAAGAAGAGAGAGACAGAAAAAAGGCTGAAAAGAGGAGAGCTAAAAAGAAGAGAAACAAAGAAAGAAAAAAGGAAAAGGAACGGGAGAAAAAAGTAAAGGATGAAAAAGAAAATATACAGCAAAAGAATAATAAAAAAGAAAATACTCCAGTTGGTAGTAAAGTACCAGCTAAAGATGTGGATAAAAAAAAGAATACAACAACCACAAGCAAAACTGTAAATAACAATACAAAATTATCAAGTGGTCTCAAAGAACACTGCATCAATAGCACAAATGTACAAGGAAAAACAGAACAAAATACTACAAAAAGGCATGAAGACGACGATTTATCAGGAGGAGAAGAACCAACATGGGATACATCCAGTGCTTTCTTTACAAGAGCAGCTGGTCGTAATCCAGCGTCCGCTCCTGTCTCTAATCCAACAACAGTAAAAGCTAATACCCCTGTTAATAATGGCCAGAGCTCACAAACAGTTAAGAATGGCTCCAGTCAACCACCACCAGGAGAACAAATTGACCCTGTGGTGTACCGCAGCAGACAAGTTGCAGTAAAAGGTAATGAGATGGCTAACCTTGGTAACTATCAGGCAGCTGTGGACTTGTTTACTGAAGCTATTAACCTGGATGCCAAGGACTTCAGGTTTGCTTCTGTGTTTGTGTTTCCAAAACAACACACTCAGTTGGTAGACCCATCTTTTGGGGCCATCTTTATGCTAGAGGAAGTACAAGATGTGTCATTTCTCCACAGATTCTTTGGAAACCGTTCTTACTGTTACGACAGAATGAGTCAATATGAAAAAGCGCTACAGGATGCGGATGTTGCCATCTCGCTTGCTCCTGATTGGCCAAAGGGATATTTTAGACGTGGCAGAGCACTGTCAGGATTAAAGTTATATTCTGATGCAGAGAACAGCTTTGCTCAAGTGTTAAAACTGGATAAGCACTGTGAAGATGCTATGTTTGAACTGGCAAGGGTCAGAGTACAACAGCTAGAGGAGATGGGATTTCCTCAGAATCAAAGTGAGGCAGCCATTCAAGCATATGGTACAGTACAGGCAGCTTTAGAGGCTCTGTTAGCTGGAAAAGTAAATTTTCCAGTCTCAGCAGAAATATATGTTTCTGATGGAGAAGATGACCAACAAAAACGACATGCCAAACTAAGTGAAAATTTAAGCAATGGAGATGAACCTTGTCGTTCACTGTGGGTGGGAAACATCAACCCAGACGAAGTGAGCGAGAGGCATTTACTGCAGCTGTTTAGCAGATGTGGCAGAGTCGACAATGTACGGATTCTCCCCAAAAGATTTTGTGCTTTTGTCAACTACGAAAAGGCAGAATCAGCAGCCTTAGCACTTGAAAAATTACAGGCTTATGAGCTGGGAGGCGAGGCAATACTGTTGAGATACCCTAACAACACAGGATCCCCAGGAAGCCAAGCTGTCCATCCCAATATCAACCCTGTGACTCCTGTTAAAAAGAAGCCACAGGAGGGGGATGTCAAGTCAATGTCACAAAAGCTATCGGGCCCAGTGAATGGAGACGAGTGCTATTTCTGGCGCACGACAGGCTGTTATTTTGCAGAGAAATGCAGATTCAGACATGTTCCGGAGAATAAGGGTGTAGACTTGAAAAGAGTAGAGGCGAAATACGGAGGGAAGTTAAGGGTGACACCACCTAACGAAAATAACAGATGA

Transcript

ANN03755-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B9FHF3	DnaJ protein ERDJ3B OS=Oryza sativa subsp. japonica OX=39947 GN=ERDJ3B PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006237 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47678 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 31	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN03755-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.