Gene detail

Detailed information of ANN03785-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:4277351...4295561
NR annotation: CAH3117107.1, unnamed protein product [Porites lobata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN03785-RA

ATGGCGGCGAATTTGAAGAAATCAACAAGGCATCTTGACCAGAATATCAATAACATCTGTGATCTTCGTAACATCCCTTTTCCTAACTTACCAAGACCTTTGGGATATGGAATCATTGCATTCGCGTCAGCTGCGTGTTATTTCAATACCTTGGAATACGATTTGGTCCACGACGATGTATTTGCGATCAAGGACAACGCGGACGTCCGCCCGGAAACTCCACTGCATAATTTACTCTCGAATGACTTTTGGGGCAAGCCAATGTGGAGCAATAGAAGTCACAAGTCATACAGACCGCTCTGCACGCTTACCTTTCGAATGAATTACGCAGTTCACGGATTAAACCCTTTTGGGTATCATGCAGTTAATGTGATTTTACATTGTATGGTTTGTTTGTTGTACACCTTTATGTGTGATGTGGTGGCTTTCAAGTCATCCGTGCTTGCAGTTCTCGCAGGACTTCTGTTTTCTACGCATCCTGTTCACACAGAAGCTGTGACAGGAGTCGTAGGACGAGCAGATGTGTTGGGATGTCTACTTTTTCTACTCTCATTCCTGGCATTTGTGAGAAAAATACTAAAAATAAATGAAGTTCAGGAAGTATTTACAAAATCTCTTCTCCTTTTGATAAGGTCAACAAAAAATGAGGGTCATCACTGTATCATGTACACAATTGTCTGCATCATGTTTGGTTCAATGGCAATGCTTGTGAAGGAGCATGGCATAACTGTGTTTGGTGTCTGTATAGTCTACGATTTTCTAATAATCAACAAGAAGTTAACATGGAGGTTTTTAAATAATAGGGGAATGCTGTCCTGTGAAAGTGGAAGGGTTAAACTGGTTTTGATAAGAACACTTATTCTTTCTGCATCAGTTTTGTCTCTCATGGCCTTCAGAATATGGATGCTTGGAGGTCATCTTCCTTATTTCACAAAGCAAGACAATCCAGCATCATTCTCAGACTCTCTCAGCACTCGTGTTTTGACTTACTGGTATCTGATTGCATTTAACTGTTGGCTTCTGCTCTCACCAAGTGTCTTGAGCTATGATTGGCAGATGGGTAGTATACCACTTGTGGAATCACTGTTGGATTTGCGAAACTTAGCGACATTCGCATTCATCCTAGTAGCTGCGCTTTTGGTTTACTCTGCTGTTATATCAAACAACACTGATCCCAATGAACAGGACATTCTTGTGCTTTCTCTGGCTTTGCTGGTTATTCCATTCCTTCCAGCATCCAACCTATTTTTTAGAGTGGGATTTGTTGTTGCAGAAAGAATTTTGTATGTACCAAGCATGGGATTTTGTATACTAGTTGTTTGTGGACTCAACAAATTAGCAGCAGTTGCTGCCGGACATCAAGTTGAAGATGTGTATAGCAGCAATGGAAATGGAAGAAATGCATCTTTAGATGCACCAACCACAGATGCAACATCCATGCTTCACAAAATTTTGTTGTCAGTAGTTTTTGTGTTAATTGGATTATTTTGCTGGAAGGTTGTTGTTCACAACCGTGTGTGGAACAGCAGGGAGACCTTATTTAGATCTGGAGTAGAAACCCTTCCCCACAATGCTAAAGCTCATTATAACTTTGCCAATTTTCTGAAAGATGTTGGTAGGAACAAGGAAGCTGTGCATCATTATGAAGCAGCGCTACGGTTGGCTCCAGATCATGTCAGTGCTCACAATAATCTTGGTACTCTGTTGGAAAACAACGAGGAAGCCATGAAGCATTTCCATCAAGCCATAAGACACGACCCTTATCACGCTAACTCTTACTTCAATCTTGGAACACGGTTGGCGGCTTTAAAACGTTTGCCTGAAGCTGAAAGCATGCTGAAAGAAGCGTTAAGAATAAATCCAGCGTATTTGGATGCAATCATGAATATTGCCGGTGTGCTGAGTGATCAAGGAAAATCCGACGAAGCTGAAGTGTTTTATAAAAGAGCTCTAACTTTAGAGCCACAAAATGCTGATGCTTATAATAATTACGCTGTGTTCTTGGGAAAAGTTGGTCGAACAAAGGAAGCCTTGGAGAAATATTACACAGCGTTAAAACTGAATCCTAGTCACTCGGTGGCTTTGGTGAACATGGCTCGCCAGCTACGTGCATCCGGGAACATTCGGGAGGCAGAACAGGCTTATACCAGAGCTTTATCAATAAAAAGAGAACCAAGCACTTTACAGCTTCTCGGAGTCTTGTATTACCATAACAATCAGTTAGAAGAAGCAGAGCTGGCTTGGAAAGAGGCGCTAGAACTGGACCCGTCAAATCTCGAGACTCGCTCAAACTATGCCATTCTACTTGGTCGCACAAACCGGCTCAGTGAGGCTGTGAGAATTCTCAGAGGAGTGGTGCTAGATGATCCCCACAACCTCGAACATTATAAAACGCTGGCTGGAGTGTACGCTCAGAACAGGCAACTAAATGATGCTTTACAAGTTATAACAGGGGCTCTAAAACTTCATGGTGGAGATGCAGACATGCATTTTCAACAAGGAAATATTTACAAGGATTTAGACAACATGCAACAGGCCAAACAGAGTTTCAAGATGGCTTTACAGCTGGACCCAGATCATTTTAGTGCTCATTTGAATCTCGGGGTTATATTTCATCTTGAGGGTAATTATGCAGAAGCACGAATACATTATGAAAGTGCAGCTAAGTTGGATCCAAACAACGCCACACTGAAACAAAATCTAGCAAAGCTTCAACGTCTGGAGAAGAGAAATAACAACTGA

Transcript

ANN03785-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UV71	Protein O-mannosyl-transferase TMTC1 OS=Mus musculus OX=10090 GN=Tmtc1 PE=2 SV=2
Q8IUR5	Protein O-mannosyl-transferase TMTC1 OS=Homo sapiens OX=9606 GN=TMTC1 PE=1 SV=3
Q6ZXV5	Protein O-mannosyl-transferase TMTC3 OS=Homo sapiens OX=9606 GN=TMTC3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000850 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13432 all species →	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF08409 all species →	TMTC_DUF1736	Protein O-mannosyl-transferase TMTC, DUF1736	Family	Interproscan
PF14559 all species →	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR013618 all species →	Domain	Protein O-mannosyl-transferase TMTC, DUF1736	Interproscan
IPR052943 all species →	Family	TMTC O-mannosyl-transferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44809 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23424	TMTC; protein O-mannosyl-transferase	EC:2.4.1.-	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.