Gene detail

Detailed information of ANN03802-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:4677101...4689871
NR annotation: CAH3117077.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN03802-RA

ATGGCAGATCCTGGTGAGGAAAAAGACGACAATTTTTCACTCCCTATACCGTCTTCTCATGGTTCAGACACGGAAATTGTCCTTCGTAGAGAGGTCTTAGATTCGTGTTTGAGTCCGAATGAGGAAAGTAGTGGAGAATCGGTGGATAAATTCGATCATGGTTTAGAAAATTGGAAGTGGAAGCCAAACACTCCGGATCCTGTGGAAAAAACATTTGATTTGGATAGGGACAGTCATATAGAGTCTGTAGAGGACAAATGTAACGCTAGCAGGGATGAGAAATGTGCTAGAAATGAGAATGTGCGAAGACCGGATTCTGCTGCTTTAGATTCCGGAAAAATCACTGAAAATGAACCTCTTAGAAAAACACTAGAATCACACGTTGACAAATCGCCAGAGATGGAATTCAGACATAGATACTCTAACAACGACAGGCTAAGTTCGCGAGAAGAAGAAACTAGGGTGATACACGGTAGTGAACATGTCTCCGAGTTAGTGGAGCCTGAAGCAAAGTCGTACAAGAAAGCTGATGAAGATCCATCTATAAGGGAAGAAGCTTCTGGGCAGAGGATCCAGGAGGATCATGATACGAAGAGTTGTCCACCCTTTGAAACAAACCATGATTTAATTTCAGAGTTGTCATTTATGAAGTACATTATGGCAGAAATTTCCCGTGGAAAGCTTATGGAACTTGAAGAAGACAAGTACACAGAAAAACGCGAGAAGGTGTACACGTTCATGAAAATTCCACGGGAGTTTGAAAAGTTGATGGTGTTTGGTTTCATGTTGTGTCTGGATTGTTTTTTGTTCATGTTTACAATCCTTCCATTACGTTTGGTTGTTGCTTTGTACAAGATTATAACTGGGCTGCTGTTTTGTAGAATTTCGCAGATGTTGCAGCCTGCACAGATATGCGACTTATTGAAAGGGTCTATTGTTGTGATTTGTTGGTTACTTTTAACTTATGTGGACGTTTCAGTGTTGTACCACACTGTGCGAGGACAGTCAGTTATCAAACTCTATGTCATTTACAACATGTTAGAGATAGCAGACAGACTGTTTTCTTCATTTGGCCAAGACATCTTAGATGCTCTGTTTTGGACGGCAACTGAACCCAAGGACAGAAGAAGAGAACACATTGGAATAATTCCACATTTTGTAATGGCTGTTGTTTACGTGTTTTTCCATGCTGTTTTAGTACTGTTTCAGGCCATCTGCCTCAATGTCGCAGTCAACTCGCACAACAAGGCTCTGTTGGTAATCATGGTATCAAATCAGTTTCTGGAATTAAAGGGAAGTGTTTTCAAGAAATTTGAGAAAAACAACCTGTTTCAAATGGCTTGCAGCGATATTAGAGAACGATTCCATTATATCATTTTAATTTCAATTGTTGCCCTGCGGAATTTAACCGAGTTTAACTGGAATCTTGATCATTTGTTCGTCATTTGCCCCTATCTGTTTGCTGTGCTTTCTTCTGAATACTTTGTGGATTGGATTAAACATGCCTTTATCACAAAGTTTAACAATATCCCAGTAGAGGTTTACTGTGAGTACAGGGCTCTCCTTGCGGAAGATGCTACTTCAAGTCGACAAAAAAACCCACATGCCGACCATTTTGATCTTGTTACTCGCCGCATGGGTTTTATTCCTCTTCCTCTTGGCTCTCTGGTTATCAGAGTGATTGCACAGTCCGTTAAGCTTCATGGTGTGGCAGGAGTCTGTCTCTTATTGGTCACCTTCATCTTCCTTACATCAGTGAAGATATTAAACAGCATCATCTTTCTGGGGAAGGCGACGCAATACGTAAAGAAAAAGAAAGATCACGAACCAATCAAAGTCAGCCAGAAAAAACCAGCCACCAGTGCAAACCTCCAGGCCCAGAGCTCCGTGACTTTGTTGGATTCTGCGGAGAGCTCGAATGTTTCGTTGATGGGAGCGAGAGAGGTCACGGGAACAGCCTCGGGAGAAAGTGGGCAGACAAAACCACGCCAAAAAACACTTGCAGAAATTGATAGATACACTCTTTGTAACAAAGAGATAGTTGTGTTTTAA

Transcript

ANN03802-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4VBD2	Transmembrane anterior posterior transformation protein 1 OS=Mus musculus OX=10090 GN=Tapt1 PE=1 SV=2
Q5ZLG8	Transmembrane anterior posterior transformation protein 1 homolog OS=Gallus gallus OX=9031 GN=TAPT1 PE=2 SV=2
Q6NXT6	Transmembrane anterior posterior transformation protein 1 homolog OS=Homo sapiens OX=9606 GN=TAPT1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005137 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05346 all species →	DUF747	Eukaryotic membrane protein family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008010 all species →	Family	Tapt1 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13317 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0045724 all species →	Biological Process	positive regulation of cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN03802-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.