Gene detail

Detailed information of ANN04060-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:10231697...10247109
NR annotation: CAH3117011.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN04060-RA

ATGGTAACTAATCAAACGCCAGCCGCTTCATTTGTCAGAACAAACATGGCGGTGGGTGATGGAGTTGAGGAAGCCGTAGAACAGCTGATAAATACAGCTTCTGCCTTAGGAAGCACGACTATTGACCTTAGCAAGAAGAGACTAACACAGATTCCACCTGAAGTGCTAAATTTACAACAATTAGAGTTTTTGTATTTGGAGGGCAATGCTATTTCTTCGTTTCCCGAAGAGCTGTTCGATTGTCTGCCAAATTTAAGATGGCTTGATCTCAGGAACAACCGCATATCGGAGATTCCACCCATCATTGGAAAGCACAGAAATTTAAAAAATCTTTTGCTGGAGGGCAACACAATAGAATCACTTCCTTTGGAATTAGGTCTGCTTAAGAGTTTGTCAGGACTCAATCTCTCTGGTAATCCATTGGAGTTTCCTCCTTCATACATAGTGGAAAGAGGCACACAGGAAATACTCAAGTTCCTTAGAGAGCAGTATTTATTACAGCTTCGAGAGAGTGGAGCAGTGGTGGTGGAAGAACATCCAGATTCTTCATCAAGTGAAGAACAACTGCCTGGTCCACCATATGAGAATGAAGTGACATGGGACCAAGAGCCAGAGGAACAAGTTGAAAATGAGAGAAATGTTCGTGGGAGATTCAAACTGCCGCCGATTTTCCAAGCGGCCGCGAGACCAAAAAATAGGACCGTTGATGAATCAGAAGGTTTGTTAAGAGGGCAAAAAGCTCGGACGTTTGAGCAGGAAAAACCGTCCAGGAGTTTTGCTCATCTGGATGTGGAACGGGAGCAAAAGTCTCAGGCGAGGACGGTGAAACACGAAGCTAAGTCACCGAGGAAGGATGTATTGTTTCATGGTTCTGGAGCGAAGGAGGGCAGAGTTCAACTAAAACCGCTTGAAAACGTTCGACGCAAAAACGATTGGAAAGGGAAAAGCTTAGAACCTAATCTCGGCAAAAATTTAGACTTGGATAAGGATTTATATATTGTGGATACTGCAAATAAGGATGCCAAAAAACCAAAGAGTGAGAAAACGAGACGAAAACAGCGAACAAAGTCGAAAAGCCCTCAAAAGATTTTGCCGTTGTTGGAAAGTTCTAATTCTAATGACCGAGCAGTTGTGTCAACGATGGCTGAGAAGACTGAAAATGCCAGGGAAAGGAACTTTGTAGAAGGAGTCAAACCTGCATCGTTTGGGAACGAGAACTTGCCCAGTGATAATAAAGTTCAGAAACCTCAACATTCAGACATTCATGGAGTTAGCGGCAAAGGTTTAGGGGGGTTTACTTTACTTGAAGGAGATATGGTGGCCGTTAGAGTGCCTGAGAAGCTGTACATCAAAGGACAACCTTGTCTTGGTAAAATAACAACGCTAGCGGACCACCAAGGTCTGCTCACTGTTCATTACTACACGGGCAGTTATGAGGGTCGCTGGAGACCCATGATGAGCCGGACCAGTCCCTACCTTAGGAAGGTGGATGCGGCTGATGTGCTTTGCAAGTTCAAGCTGAGTTCTGATGGAAGAATGTCGCCGATCACCCAGCGAAAGTTGAGGACGGTTGTTGATGACGAACGAAATGAAAGCGATAAAAAGAATTCAACTTCTAACAGTCGTAGAAGAAGTAAATCAGATAAAAAGCAGCTTCCTGGACCGATCAACACTCCAGTGACATTCCACCCCCCTCCCTCACGATCAGATGTGTTACGGCGAGAATACGACAGACAGCGGATGGAGCTGCAGTCTAGCAGCGGGCTGTCAGCGGATGCACGTTCCAGGGAGGTTGCTGGACAGGTTAGATCTGCACCCAGGCAGAAGAAGACCAGTCCTAAATCAGAAACTAGTTCTAGGTCCGCTCGGTTTCAGTACGATGCAAACGCGACTCCAAGGTTCCCGGATTACGAGGCTCGGTTGGCCGATCAGCAACAACTGGCGGTATTAGCTGTGATGAACGAGAAAGAGGCTTTGGTCTTACAGAAAAGAAAAGACAAGCAGGTCCTGGATGACTGGAGAGAACAGACCAAAGTTATGCGTCAACAGAAACAAAGACTTGCCGCCATAAAGGGCGCACCCCCAGTCGAGGTGAAAGCTCCTTACGGAACCGAAAAATCGGTCAAGGAGGAGGAGAAGACTCCGCAAGGCTACGCCAAGCGACTAAAGGAACTTTTAGAAGAAAAAGATGGAAAAGGAGCAGCGAGAAGGGCTCTAGAGGATCGCGAATTGGAGAACAGAATCAAAATGCACATGGAGAAGTTACAAGACCACCGCTCAAGAACATACGGATCCATAGAAGAAGAGATGGAGTCTGCAAGAAAGAACCTAGAAATGGCTCGGCAAATCCAGCGCGATGTGCATGAAAGGAAGGAATTGGAATATCGACTGCGGGCTTTCACTGGTGATGACGTCACTTCGGCATTGTGGGATTCAAAGTCCAAGACAAAGAACGCGCCAAGATAA

Transcript

ANN04060-RA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR050216	Family	Leucine-rich repeat domain-containing protein	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48051	-	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16175	SCRIB; protein scribble	-	Human papillomavirus infection	ko05165	deepkoala