Gene detail

Detailed information of ANN04456-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:18389953...18400898
NR annotation: CAH3035224.1, unnamed protein product [Porites lobata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN04456-RA

ATGGAAGAAGTTGAAGATTTCGAATTGTCTTCTACCGAGTTGGAAAATGGCGTCAAAGTGACTGAAGGAAAAGCGGAGATCTGTTTTCCTGATTCAAATTCAGTGTTTTACAATCCCGTGCAAGAATTTAACCGAGATTTGAGTACAGCAGTGTTAAAGTTATTCTCACAGGAGTTTTCCTCTAACAAGAAAATAACTAAATCAGGAAAGATTTCCGTCAATGTGGGTGAACAAGCTGAAGATAATTCGAATCAAGAAGCTTATGATAGCGGAGCACAGAATGAAGAAACCAGTGATCAAGGAAGTGACAGTGGAATCACCATTCTAGAAGGTTTAGCAGCATCTGGTCTCCGCTCCATTCGATATGCTTTGGAAGTCCCAGGTGTGAATAGCATTACTGCAAATGATATCAGTGCAGATGCGTACAGAATGATACAGAGAAACATTCAACACAACAAAGTACAGCATGTTGTGAAGCCAAGCAAAGATGATGCTGGGAAGGGCTGCAAGAGAGCTGGATTTGAGGTAGTAAAATGTGACAAGCATTCAAGTCGCGTTTGTAATCCTTGTGCTCGAAAGATTCTAAATCTTGGATCACTGTATTCATTTGTCCAGGAATCGTTACAAGGTAAAATTACCGAGTTTACTGCAGCTACTCCACCAAAGTCAACTTCAGCAAATAAGCACTTACTGGACACTCCAGAGGGAAAGAGTCCGATTCGCAAATCGGTTCGAGTGTTATCGCCGGCGACCAAAACAAACAAGGGAAAGTCTTCACGGAAATCTGTGCAGGAAAGGCTTCAAGCATCTGAGAAAGAAAATAATAATAATATTGACCAGTATCTGAACATAGACAATCTTCCCGAAGGCGGCCTCCAAGTCAAGGTTGTTTTTAAAAAACCGAGTCTGAAAATGTTCTCGTTATTAATGTACAAACATCGTCACCCTCTATCAAGCCGTTTTGATGCAATTGACCTTGATCCTTATGGATCAGCGTCAACATTTCTGGATAGTGCTGTGCAGGCAGTATCTGATGGTGGAATTCTTTTAGTGACATGCACTGACATGGGAGTTCTGTGTGGGAACCACAGTGAAGCCTGCTTTGGAAAATATGGTAGCATGTCTTTAAAAGCAAAATTTTGTCATGAAATGGCTCTGCGTTTGTTACTGTTTTCTCTGGAGTCTCATGCTAATAGATACAAGCGTTACATCAAGCCTCTTTTGAGCATCAGTGTTGACTTCTATGTTCGTGTTTTTGTGCAAGTTTTTACAAGTCCCTCAGAAGTGAAACGATCTGCCAGCAAACACTGTTTAGTCTTCTTGTGTGTTGGATGTGGAACTTTTCATCTTCAGCCAAGTGAAGATTACAACAATGTTTTTGGAAGGAATAGGAGGAGGGAGGGTAACCTTAAAGTGTCTACCTGGACTGTGGAGGCTCAAACAGGAGCAGCTGTCCCTGTGGGTCGTCGTATTGAAGAAGGTCGCTGTAGGAAGTACCCTCCAGCCCTGGGTCCTCCTGTAGGCCCCGCATGTGACCAGTGTAGTAGCAAGTTTCATCTAGGTGGGCCAATATGGAAAGAACCCATCCACGATGCTGAATTTGTAAACAAATTACTCAAGAGTGTCAAAGAGCAACCTGGGCTGTTCAAAACCTCGGACAGGATTATTGGATTATTGAGTGTTATTGAAGAAGAGTTACCAGACTGTCCTCTGTACTACACTGTAGATCACCTGTGTGGAGTTCTTCACTGTAGTACACCTTCTCTAGTGCAGATAAGATCTGCTGTTATAGAAGCTGGTTATAGAGTATCCAGCTCACATGCATGCAGAACTGCACTCAAAACAGATGCTCCTCACAACATTGTGTGGGACATCATGAGATGCTGGGAAAAGCTTCACCCAGTGAAAAGGAAGAAAGCGAGTTCTCCAGGGGCAGCCATCCTTAGTAAGGCACCCACCATACAGGTGTCGTTTGATGTGAAACCTGGGGCAAACCCAGCATCAAGGCAGAAGAAACTTCTTAGATATCAAGCAAACCCTGAAGCAAACTGGGGACCTAAACCAAGAGCAAAACGGAAGAAAGACAGTGAGACAATCGAGGAGAAAAGACAGCGTTTGCAAGGGCGAAGGACTGTGGAAGAAGACAAAGATTATTACAAACAATTTCCTTGCAAGAGATTCAGAACTGGCAAGTGTGAGTACGGAGATGAGTGTAAATATTCGCATGATGTTAATCTGAACATTGGAAAACGTAAATCGCGTGATGACGACAATGAATGCACTGCGGAGGTAGATAACAAAGATGAAGACATGGAGTAG

Transcript

ANN04456-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NXH9	tRNA (guanine(26)-N(2))-dimethyltransferase OS=Homo sapiens OX=9606 GN=TRMT1 PE=1 SV=1
Q3TX08	tRNA (guanine(26)-N(2))-dimethyltransferase OS=Mus musculus OX=10090 GN=Trmt1 PE=1 SV=3
Q9VK89	tRNA (guanine(26)-N(2))-dimethyltransferase OS=Drosophila melanogaster OX=7227 GN=Trm1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005103 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02005 all species →	TRM	N2,N2-dimethylguanosine tRNA methyltransferase	Family	Interproscan
PF18044 all species →	zf-CCCH_4	CCCH-type zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002905 all species →	Family	tRNA methyltransferase, Trm1	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR041367 all species →	Domain	E3 ligase, CCCH-type zinc finger	Interproscan
IPR036855 all species →	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR042296 all species →	Homologous_superfamily	tRNA methyltransferase, Trm1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10631 all species →	N 2 ,N 2 -DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan
GO:0160102 all species →	Molecular Function	tRNA (guanine(10)-N2)-methyltransferase activity	Interproscan
GO:0002940 all species →	Biological Process	tRNA N2-guanine methylation	Interproscan
GO:0004809 all species →	Molecular Function	obsolete tRNA (guanine-N2-)-methyltransferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN04456-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.