Gene detail

Detailed information of ANN04875-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:24666252...24672572
NR annotation: KAJ7392293.1, hypothetical protein OS493_011949 [Desmophyllum pertusum]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN04875-RA

ATGGCGGTCGCAGAAGGAATGGCACTCGGGTTTTCTTTGCATCTTCGAGCTGAAGAGGTGATAGCAAAGTTTCGGAAGGAAATTGAGGATGATTTCAAGTATCTTAATGAGATCTTAGCTGAAGCCAAACAACATTTTGGACGACGTGACAGCAACATACTTCTTCCCAAAACACCATCAATGAAACGAAAGCGCCAAGAAAGTGATGAGGAACACAGCAGTGACGACAACACAATAAAAACAATGAAAGGACTAAAAGCTGCCAAAACGCACGGATATGACTCTCCTCTGACAGTGATCAATGAGGGTGAAACTTTAGACTGTAGCCTTATAAATGGAGAAAGCAAGGAAGATGGCACCAAAAGACCAACACGAGCAACCAGGGCAGGTGTGCCGGCCAAAAGGCAACAACCAAAGAGAGGATCAAGAAAAAAGAATATGCCAGTCACAGAAACTGCAAATGAAGAACAAACAGATTCGTCTTCTATGGATGAAAAGCCAAGAAGAACCACTAGAAATACAAGAAAGAAGAATTTGGAATTGGAAAATTCGACCCTGGAAGAAAAAGTAGTGGCTTCGTCTTCTACCAATGAGAACAAACGACCCCAGAGATCTACCAGAAACACAAGGAAGAAACTGGTGGAAGAAGCTGGAGAGATTTCATCTACAGAAGAACTGCCTTCGCAGCCTTTGATTAAGAAAAGCAAGTCAAGCCTGGGTAAAAAGGTGGAAGATTCTGGAGAGACTGTTCCCATGGTGATTGTGAAACAAGAAATAATCTCACCTTTTGCAGAAGTACAAACACTGAGAAGAAGCACAAGAAATTCAAATTCAAGAAAGGAGGAAGAGAAGGAAGCCAAAAATGTAGCTTGTGTTCCAGAAACTCCTGATCCACCTACTGTCAGTGTAAGCAAGGATGTCATGTCACCCCCAGCATCGGCCAAGATATGCAAAGCAACTGTCCATTTAGTCTTACAATCACCAGGCTTTAGTATTGGAAAAGACAAAGGAGTGATTCCCAAAGACACTTCAAGTCCCTCTGTTGAACAAGATCGTGAATCACACCATGTTGCAGTGGAGAAAATTTCACAATGTGCAGAAAGGGAGAAAGCCAGTGGTGATGATACTACTGCAAGTTCACCTTCTTCCAAGTCTAACCCTCCTGATAAATCACTTGAGACTCACATAAAGAAGTTACATGAATCTGAAATTGAGAAAGACTCTGATGGCCAAGAGAAAGTCAATCATAATGACAATGTGATCACTAGTGAAAATATCTGCGATACAACAGGTGGGATCATCAATGAATCTAAAGGTGATGTTGAGAAAGAAAATATGAAGGAAGCTGGTTCTGGGGTAAAGCCTGGAAGAAAAGGCACAAAGAGGAGCAGTGGATGGAGAAGGAAGAGCAAACGGTCAAGTTGTCACTTGTCTCCTGCAAACAGACGTCTTTCACTCAAGAGGACAGTTACCAAGTCCAAGGCACCAGGAAAAAAGAGTCTTGTAAAAAGTGCTGTTAAGCTGAAACTAACTCAATCTAAGCTCATGCCTGAATTAACATTGAGTGGTACTGGACAGAACAGGGATGAGACAGTGGAGGATCCTGACCTGGAAAGTGTACGAGTGCGGCTGTTTGATGACTTGACAAGTACCAGCAGTGCCAGTGCAAGCTCTGCCGCTTCACACAGCAGCTGTAGCAGTACTGAGGACAAGGTTGATGTTCCAATGGAGAAGCTTTCAGAAGATCTTGTTGAGAATGATGCCCAAGAGGTGTTTCATGACTGTAGATCAGAGAATGAAGCTGACAATGAATCTGAGGATGCAAAGGAAATAAAGACAGACAGTGATAAATCGTCTGTTGAGGAGTGTGCCACTTCACCAGTGGCTGACATGCACGCTAGTCAGGGCAGCAGTAGCAGTGAAGGCTCTGGACCAACCACAGAGATTCCCACTGAGGAACCAAGGACACCACCACAGGAAACCCAAGTGGATGTCAATCCATCGCACAAGGTCAAACCAAACAACATTGCTCTTGTGCATTCATTTATCAGAAGGAATACTCCAAAGAAGGTGGACCCAGAGGAAAAGAAAAAGCAACTCCGCATTGCGCTGAAAGAGAAAGAAGAGAAGGAGAAAGAACGGCGAGAACAGCTTGAGATGCAGAAACAACGAGAAATTGAAGAGCGGAAAAGGAGAAGAGAAGAGCGTGCCAAGAAGGCGGCCGAGCAGAGAGCAGCAAAACTTCACGCGCTTGAAGAGAAGAAACGTCAAGTTCATGACCAGAGACAGATCATTGAGGAAAAAGCAAGGAAACTGAAGGAGAAAGAAGATGAAGACAAGAAGAAACAACGAATGCAGAAAAGAGCAGAGTTAGAAGCGAGGAAAAAACAAGAAGAAGCTGCCAGACAGCAGCGAAAACGAGAACAGGAGGAAGAAGAGAAACGACAGCGGGAAGCTCTTCAGAGGAAACAGGAGTTGGAGGAACAAGAGAGACAAAGGAAGATTGCAGAAGCCAAACGCCAGCAAGAACATAGAGAGAAAGAGTTGGAGAGGGAGAGAGAGCTTGAGAAACAGAGAAAGCTGAAGGCGATTGAAGATAAAGAAAGACGACTCCGTGAAAAAGAAGAGAAGGAAAGAAAATCGAGGGAGGAAAAACAGAGGATTGAGCGCGAAAAGGAAGAGAGGGAGAGAGCGAGAATAGCACAGCTTATCCGCGAGAAAGAAGAGGCCGTGATACGGGAGAGAGAGCAACGCGCTAGGGAAGAGAAAGAACGACAAGAACGTGAGAGAAAGCTGAAAGAGGAAAGGGAGGCAGCGCTACGCGAGAAGAGACGACAAGAAGAGATGGAAAAAGAAAAAATACGCGTTCTCAAGGAGCGACAACAAGCCGCGGAGAATCCTAGATCGGGCGTGAAGTCATGTGACTCGTACGAAATGACCCCACCTCCTGTGAAGACCAAAAAACCGGCATCCCAAGAAAACTACAACATTGAAGATCTCCATAGCGACGACTCGACCGACGACGAAGATAACCCGAGAAAGAAAATTCCGGCGTGGGCACGACAGCCTGCACTCACTGCCGCCGTTTTTAAGCAGGCGTATTCGAACATCGACGTGGACAGTATCTTTGACCGAGTTCCCCCACTGAACCTGGAGGAAGTTTTTTCGCGGAACAAGAAGCGCTTTAATAACCGTACAAGCTCGGCGATTTGGAACTCTCCGCCCTATAGACAAGTAAGGAAAGGAACTTTGGTCTAG

Transcript

ANN04875-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O13024	Inner centromere protein A OS=Xenopus laevis OX=8355 GN=incenp-a PE=1 SV=1
P53352	Inner centromere protein OS=Gallus gallus OX=9031 GN=INCENP PE=1 SV=1
Q9WU62	Inner centromere protein OS=Mus musculus OX=10090 GN=Incenp PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006759 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03941 all species →	INCENP_ARK-bind	Inner centromere protein, ARK binding region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005635 all species →	Domain	Inner centromere protein, ARK-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13142 all species →	INNER CENTROMERE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000281 all species →	Biological Process	mitotic cytokinesis	Interproscan
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0030496 all species →	Cellular Component	midbody	Interproscan
GO:0032133 all species →	Cellular Component	chromosome passenger complex	Interproscan
GO:0051257 all species →	Biological Process	meiotic spindle midzone assembly	Interproscan
GO:0051310 all species →	Biological Process	metaphase chromosome alignment	Interproscan
GO:1990385 all species →	Cellular Component	meiotic spindle midzone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN04875-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.