Gene detail

Detailed information of ANN04959-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:25565202...25592714
NR annotation: XP_020606150.1, ankyrin repeat domain-containing protein 17-like [Orbicella faveolata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN04959-RA

ATGTCTATTCACCAACAACAGAAGTCAGTGACGAGTTCAAGCGCGGTTTTTCCGAACGAAAGGTCGCCATCGATTTCGGATTCTTCAGACGAGGAAGATGATGATCTTGACGACGAAAGCGCCGAACATTCAGCGATGGAGTACATTCTCAGAGCTAAAAGGAGTGAACTGACATCCAAGCTTATGCTCTCTGGTTCAGATGGTCTAAGTAATGATTTACGAAAGATGGACCCAGAGACGCAGGCTCGTTTAGAGACTCTCCTTGAAGCAGCAGGTGTTGGTAAGTTGGCAGATGGCAAGGCATTTACTGATCCTGAAGTTCTTCGCCGCTTGACCTCATCAGTTAGCTGTGCACTGGACGAGGCTGCAGCTGCTTTAACGAGGATGAGAACTCAGAACAATGGCATGCCATCATCAGCTGGTCAGACCACTGCTGATTCAGGAGCCCGGAGCCTTGCTGAAGCTTGTCTGGAGGGAGATGTTAGTGCTGTGAGGAAGCTTCTGGAAGAAGGGTGGAGTGTACATGAACCAACGGATGAAGGGGAAAGTCTGCTCTCTCTAGCTTGCTCAGCAGGATATTATGAACTTGCTCAAGTGCTCTTAGCCATGAATGCCAGTGTTGATGATCGTGGAAGTAAAGGAGATTGCACTCCTCTGATGGAAGCTTCCAGTGGTGGCTATATTGACATTGTTAAGCTCTTACTTGAACACACTGCTGATGTCAATTCACAATCACAAGCTGGTAACACTGCCCTTATCTATGCCTGCTGTGGTGGATATGAGGATGTTGTCGAGGTGCTGTTAAACCATGGTGCAGACATCGAGGCACATAATGAGAATGGCCACACCCCTCTAATGGAAGCGGCCAGTGGAGGACACGTAAATGTTGCTAAGATGTTATTAGAACGAGGCGCCTGTATAAACTCACATTCAAATGAGTTTAAAGAAAGTGCATTGACATTGGCATGTTATAAAGGTCACCTTGAGATGGTCAAGTTTCTGCTTGATGCTGGAGCTGATCAAGAGCACAAAACAGATGAAATGCACACAGCACTGATGGAGGCCTCCATGGATGGACATGTGGAAGTGGCTAAGCTTCTTTTGGATCATGGTGCACAGGTGAACATGCCTGCTGATAGTTTTGAGTCACCTCTGACATTAGCAGCCTGTGGTGGTCATGTGGAGCTGGCTGACTTGCTCATCAAGACAGGTGCATTTCTGGAGGAAGTCAACGATGAAGGGTATACACCTCTAATGGAAGCCTCACGGGAAGGACATCTTGATATGGTTGCCTTACTTCTGGAACATGGAGCTGATATTCATGCACAAACAGAGGAAACCCAAGAGACAGCCTTGAGTTTGGCATGTTGTGGTGGTTTTCAGGATGTAGCTGCATTTCTTCTTCAAGCTGGTGCTGCCATTGAACAGGGCTCATCAACTCCACTGATGGAAGCTGCTCAGGAAGGACATGTAGATTTAGTGAAATTCTTGTTAGAGCGAGGTGCAAATGTTAATGCGACAACTGCCACTGGTGATACCCCACTGTCATTCGCTTGTGAGAATGGTCATACTGATGTTGCTGACGTTCTGCTTTCAGCTGGGGCTGAACTGGAACATGAGTCTGAAGCTGGTCGCACACCTCTAATGAAAGCGGCAAGAGCTGGTCATCTCTGCACAGTACAATTCCTCATCAGTAGAGTTAAAAGAAATGCTTTTAAGTTTCAACAAGTGGACCTAGGCAACTTGAGTCCACATGATTCTGACAAATCCTTTAATGGCTACCCTAAAAGAGCTGATGTCAATCGTCAAACCACCATGAATGATCATACTGTGCTGTCTCTTGCTTGTGCTGGTGGACATCTGGCAGTTGTTGAGTTGCTGTTAGCACATGGTGCTGATCCTTTACATAAGTTAAAGGATAATTCAAACATTTTAATAGAAGCTGCTAAAGGAGGCCATGCTGCTGTCATTTGCTTTCTGCTTGAGAATCCCATTGTTTCCAATCCTCCTGAGCTTCCACTTCATTCAATGCCTGCTTCCCTTCCAACTCCTACTGTTCCACCACCGCGAGTACCTCCTGTTCATGCCACTCAACCTCCCGTCATGGAACATCCAGATATGACGGACATGTCTGCTGACACGATGATGGACATGCAGCAGCCGATGCTAAACCAGTTGTCAAACACTCCCTTATCACCACATTCTCCTCTGTTGCTAAATGCACCTGCTAACTTCCTCATGCCAGAGATACCAATCACATCTTGTTCCACTGCCTCTACCATGCCATCTGTCAGCCAGGCTATGTCAGATATGTCAACCAACATGACATCAACAGCAGTGCAGACTGATAACAAGGTTGTGATTTGTGAGAAGCTGCAGCTTATTCAAGGCAAGTTGGCTAAGGCATTGAAGAATGCTAACCTCTCACTGGATAACATTCCACCTGAGCTGCTCCAGAGTGTTAATGAGGAAGTATCAGCTCTGAATCTTGATGGGGAGGAAATTGCAGTGCCTCCCTCGCCTTTCTCTATGCCTGTTGACACTAGGGTGATAGGAGACCAGGATGGCATTGAAGGATTGATGGTTGCAGAACCAGCACAAACTCTTCATGATACTATTGGAGATATGCTGTCTGAAGACTCAAGCAACAGTGGTCCCCCTACCCCTCCAGACCTCACCACATCATCAGTACCCCTGACCCCCACCCCCTCACCAGCATCGCCTCAGTTTCCACCCATGATTGACGTGGATCAGCAGACTGACAGTAACTCAGACACTGCACTCACACTGGCTGCTGCTGGTGGTCATGACGAACTTGTAACACTTCTGTTAGTCAAGGGTTCTGACATTGAGCATAGGGACAAGAAAGGTTGCACACCACTGATTCTTGCAGCCACAGCAGGTCATGCGTCTACTGTGGAGATTTTGCTTGATCATGGGGCAGATATTGAGGCTCAGTCAGATCGCACCAAGGACACGGCACTATCTCTGGCATGCTCTGGTGGTAGGCAAGAGGTTGTTGAATTGCTGATTGCTAAAGGAGCAAACTTTGAACACCGCAATGTGTCAGATTACACTCCACTTAGTCTGGCTGCATCTGGGGGTTATGTTGGAATCATCAAACTTCTACTGAGTCATGGAGCTGAGATTAACTCTCGCACTGGAAGTAAACTGGGCATATCTCCCTTGATGTTGGCATCAATGAATGGCCACACAGCCGCTGTCAAACTGCTGTTAGACATGGGAAGTGACATCAATGCTCAGATTGAGACCAACAGGAACACAGCCCTGACTTTGGCTTGCTTTCAAGGACGGCATGAAGTTGTAAACCTTTTGGTGGATAGAAAGGCAAACATTGAACACCGTGCTAAGACTGGTCTGACTCCCCTAATGGAGGCAGCTTCAGGTGGTTATGTCGAGGTTGGCAGAATCCTCCTTGATAAAGGTGGTGATGTTAATGCCCCTCCTGTTCCATCATCACGGGACACAGCACTGACCATTGCTGCTGACAAGGGACACTACAAGTTCTGTGACTTGCTGTTGTCTCGTGGAGCCATGGTTGATGTGAAGAACAAGAAAGGAAATTCACCACTCTGGTTGTCTGCTAATGGGGGTCATCTGGAAGTCTGCCAGCTTCTTTTCAGTTATGGTGCAGATGTTGATAGCCAGGACAATAGAAAGGTGTCAGTCTTGATGGCAGCATTCAGAAAGGGTCACATCAAAGTCGTCAAATGGCTTGTTAAACATGTCCATCAGTTTCCTTCTGACTCTGAATGTACACGATTTGTATCCACTCTCTCTGACAAGGAGCTGTTGAATAAGTGTCACAAAAACATGGAGATAATAATAACAGCCAAAGATCGTCAGGCTGCAGAGGCAAACAAGAATGCTTCCATCCTCCTGGAGCAGATCGACTTGGAGAAAGAACGTGAGGAGATGAAGAAAGCAGCGGCTGCTAGGAAGAGGGACAAGAAGAAACAAAAGAAAAAGAAGAAGCTCCAAGCAGAGAAGGAAGCTGAAACAAATGTTAAGAACATGGCTGAGAAAGAGAACAGTGATGACAGTAGTGAGCCAGAGAGGAAGATATCTGAGAATGGTGTTGATACAAGTGTCCTACCACCACCACTGAGTACGTCCACAGTAATTGACAGCAACAGTGTGAGTGGCGTCAGGACAAGGAAGTCATCTACCGGATCACTAGACACGCTGACAAGCATTGCCATTACTGCTGCAGTCACAACCACATCCTCAGTAAAGCATGTGCGATGGAATACATCAAGTTTGTTGAGATCAGCTGTCGTTATTCTCCACATAGCGGCCCCATACAGTAACACAGACAGCACATTGGAGTTCAGGATACGCAGCTTGGTCTTGTTGCTGAATCTCTGTGACCTCCAGATGCTCTGTAGTCTGGTAAATGCATTCCTGGCTACTGCTAGTCGCCTCTTGATGTCTGCCTGTGTGCCACCATGTTTGTCTAGCACCGATCCTAGGTCTAATGATGTCATCAGTGTTATAAAAACTGCGGAAATGAGCAAAGTGGTAGCCAGTACCATCATGACCCAGACCACCCCTCACAGTGCACTTTCACCCATCACCGTGGCAACTGCTGCTGCCCAGTGTCTTGCTGTGACTCTTACTACTACAACAGCTTCCACTAAGATGTCCACCTTGCCGAGCCCAAAGAAAGGGAAAAGGCACGAGGATGGCTGGAAAGAAGTCGTTAGAAGGTCCAAGAAAATGTCTGTGTCATCTTCTGTAATCAGTCGTGTGATTGGTCGAGGAGGATGCAATATCAATGCCATCCGTGAAACAACTGGAGCGCACATAGACATTGATACCAATCGACAGAAAACAACCGGCAGCTGTATAGTTACAATCAAAGGACCTGCAGATGCCACGCGACAAGCTCACCAACTTATCCAAGCCCTTGTCAAGGACCCTGAGTGCGACATCAACGACGTTCTTCCTCGAAAAAAGCACCTTCATTCTCCAATCAGCCGTTCAGGAGCCGCAACAACGATCACCACTTCAGTCACATCCACTGTCTCACATCATAGAACCCTCTCAGAACCCAAACCCAGCATCACGTCCACTAAACTACCTTCCACAACACACTCCACACAAACACGAACCACTACAAAAACTACCACATCTCAGTGCCTGTCCAGCTCTTGGCCAAGTACTAGTACAGTCCCTGCATCAGTGCATTCCCAGGTAACCACATCCGTAAGCCGTACCACTGCCAAGAGTACTGTCACTACATCCTCAACTCACATACCAAGTACCGCACGCTGGGCGACCACAACGCAGACGTCCTCTAGTAGCACCAAGAAGGCACCATTGGCAGCTGCTCAGGTTCCAGTGACGAGCTCACAATCAAATACTGCTCCTGCGGTAGCAGCATCGGTGAGAAAGACTTCTGGAGGAACAGGAAATGCAATTGGTTCTTCTGGTTCTGGTGTGATCAAGCCTCCAACTCCTGCCAAGCGGCAGCTGTTCCCTGAAACATCGTCGGAGGTACCGAGACAAACGTCAACAAGCAAAACATCCAGAGTGGTAAAAGGGTCTCCCTCCTATTCATCGGTTGCTATGGGGGTCACAGGATCTAGTTTAGGTGGGCCACTTGAAGGAACGACACCAGTCACAATATCCTCGTCATCATCTGTAACAGGTTCTGTGATCACATCTTTGGGTTCTTCAAATCTTCCAGCTGCCATCAGCAACATCCTGTCAAATGTTGGCCAAACGCTGAGTCCCAGTGTATGGAATGACATCGCTCATCCAAGCATCCGACCAAACGTTGGCCCCGTATCGGAACCAGACCATCCCCCTTCCGTGTCTCCTGCTGATCCCATCACACAGCCCCTGTATATCACCACCCCAGGAGCCCTGTTCACTCCTCTACCTCATGAAGCACCGTCATCTTCACCACCTAACACCTCTGGCTCCCCAGTCCCGACTACAACGCCCTCTACTTCAACATCACCCAACCCCTCCCCCCTAGGGACGTCACTCGCCCCTGGGAGTACCACAATGACAGAGTCTGCGGATAAGCCATGCTTGAGACCGATTGGAACTGAGAGAGCATCGAGAAGGGTGTCCGCTAGTCCATTGCCGTCAGTGCCGGGGATATCTCCATTAATAGGAACAGAGGGAACTCAAGTTGCTGGAGTTTGGAGTTACTCCTATCCCCCAGATCCTGCGCTGTCAGCAGGCTGGTCGACTGCTCCTTCAGTCTCTCCGGATGCCTCGCCACCTCTTATCAGCGGCAGTAACTCGTTGCCAGGCGCAGATGACGAGCAGTTTGGGGTTAACCCGGGTGATACACTTCAAACATTCTTGGAACGCCTCTCGCTCTCCAGCCATCTTAGTCTCTTTCAGGTTGACTACTCTTTTGTTTCGAATTGGTGA

Transcript

ANN04959-RA

Protein

ANN04959-RA

MSIHQQQKSVTSSSAVFPNERSPSISDSSDEEDDDLDDESAEHSAMEYILRAKRSELTSKLMLSGSDGLSNDLRKMDPETQARLETLLEAAGVGKLADGKAFTDPEVLRRLTSSVSCALDEAAAALTRMRTQNNGMPSSAGQTTADSGARSLAEACLEGDVSAVRKLLEEGWSVHEPTDEGESLLSLACSAGYYELAQVLLAMNASVDDRGSKGDCTPLMEASSGGYIDIVKLLLEHTADVNSQSQAGNTALIYACCGGYEDVVEVLLNHGADIEAHNENGHTPLMEAASGGHVNVAKMLLERGACINSHSNEFKESALTLACYKGHLEMVKFLLDAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDHGAQVNMPADSFESPLTLAACGGHVELADLLIKTGAFLEEVNDEGYTPLMEASREGHLDMVALLLEHGADIHAQTEETQETALSLACCGGFQDVAAFLLQAGAAIEQGSSTPLMEAAQEGHVDLVKFLLERGANVNATTATGDTPLSFACENGHTDVADVLLSAGAELEHESEAGRTPLMKAARAGHLCTVQFLISRVKRNAFKFQQVDLGNLSPHDSDKSFNGYPKRADVNRQTTMNDHTVLSLACAGGHLAVVELLLAHGADPLHKLKDNSNILIEAAKGGHAAVICFLLENPIVSNPPELPLHSMPASLPTPTVPPPRVPPVHATQPPVMEHPDMTDMSADTMMDMQQPMLNQLSNTPLSPHSPLLLNAPANFLMPEIPITSCSTASTMPSVSQAMSDMSTNMTSTAVQTDNKVVICEKLQLIQGKLAKALKNANLSLDNIPPELLQSVNEEVSALNLDGEEIAVPPSPFSMPVDTRVIGDQDGIEGLMVAEPAQTLHDTIGDMLSEDSSNSGPPTPPDLTTSSVPLTPTPSPASPQFPPMIDVDQQTDSNSDTALTLAAAGGHDELVTLLLVKGSDIEHRDKKGCTPLILAATAGHASTVEILLDHGADIEAQSDRTKDTALSLACSGGRQEVVELLIAKGANFEHRNVSDYTPLSLAASGGYVGIIKLLLSHGAEINSRTGSKLGISPLMLASMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVNLLVDRKANIEHRAKTGLTPLMEAASGGYVEVGRILLDKGGDVNAPPVPSSRDTALTIAADKGHYKFCDLLLSRGAMVDVKNKKGNSPLWLSANGGHLEVCQLLFSYGADVDSQDNRKVSVLMAAFRKGHIKVVKWLVKHVHQFPSDSECTRFVSTLSDKELLNKCHKNMEIIITAKDRQAAEANKNASILLEQIDLEKEREEMKKAAAARKRDKKKQKKKKKLQAEKEAETNVKNMAEKENSDDSSEPERKISENGVDTSVLPPPLSTSTVIDSNSVSGVRTRKSSTGSLDTLTSIAITAAVTTTSSVKHVRWNTSSLLRSAVVILHIAAPYSNTDSTLEFRIRSLVLLLNLCDLQMLCSLVNAFLATASRLLMSACVPPCLSSTDPRSNDVISVIKTAEMSKVVASTIMTQTTPHSALSPITVATAAAQCLAVTLTTTTASTKMSTLPSPKKGKRHEDGWKEVVRRSKKMSVSSSVISRVIGRGGCNINAIRETTGAHIDIDTNRQKTTGSCIVTIKGPADATRQAHQLIQALVKDPECDINDVLPRKKHLHSPISRSGAATTITTSVTSTVSHHRTLSEPKPSITSTKLPSTTHSTQTRTTTKTTTSQCLSSSWPSTSTVPASVHSQVTTSVSRTTAKSTVTTSSTHIPSTARWATTTQTSSSSTKKAPLAAAQVPVTSSQSNTAPAVAASVRKTSGGTGNAIGSSGSGVIKPPTPAKRQLFPETSSEVPRQTSTSKTSRVVKGSPSYSSVAMGVTGSSLGGPLEGTTPVTISSSSSVTGSVITSLGSSNLPAAISNILSNVGQTLSPSVWNDIAHPSIRPNVGPVSEPDHPPSVSPADPITQPLYITTPGALFTPLPHEAPSSSPPNTSGSPVPTTTPSTSTSPNPSPLGTSLAPGSTTMTESADKPCLRPIGTERASRRVSASPLPSVPGISPLIGTEGTQVAGVWSYSYPPDPALSAGWSTAPSVSPDASPPLISGSNSLPGADDEQFGVNPGDTLQTFLERLSLSSHLSLFQVDYSFVSNW

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IWZ3	Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ANKHD1 PE=1 SV=1
O75179	Ankyrin repeat domain-containing protein 17 OS=Homo sapiens OX=9606 GN=ANKRD17 PE=1 SV=3
Q99NH0	Ankyrin repeat domain-containing protein 17 OS=Mus musculus OX=10090 GN=Ankrd17 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004415 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013 all species →	KH_1	KH domain	Domain	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan
IPR047373 all species →	Domain	Mask-like, type I K homology	Interproscan
IPR051631 all species →	Family	Ankyrin repeat and KH/SAM domain-containing protein	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23206 all species →	MASK PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0045087 all species →	Biological Process	innate immune response	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16726	ANKRD17, MASK; ankyrin repeat domain-containing protein 17	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.