Gene detail

Detailed information of ANN04981-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:25956946...25974629
NR annotation: XP_020629164.1, protein SFI1 homolog [Orbicella faveolata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN04981-RA

ATGGAAATAAGAAATGATCAGGGCCATGACTGTACCACAGAAGTGAATGTACAGGATAACAAAGATGGCATCTACAATATCAGCTATTTTGCCAAAGAAACTGGAACATGCCAAGCGTCAGTGATGGTAAATGGAGAACATGTTCGTGGCAGTCCTTTCACTGTTCAAATCAAAACCAGACAATACAGACCTGTGTTATCTTTTGGACGACAAGGTTCGTCGGCTGGCATGTTTGATTGTCCTTATGGAGTGGCAGTGAATGAAGGTAATGAAATTGCTGTGACTGATAGAGACAACAACAGGGTTCAGGTATTTAGTATTGATGGAACTTTCTTGAGGTCGTTTGGTCGTGAGGGTGATCAAGACGGGGAATTTGACTGTCCAACTGGGATTGCTTTCCTTAATAATGGAAACATTATCGTGGCTGACAGCTTATACAACCGAGTGCAAATGTTCAATGGGCAGGGGGAATACCTCAGTCAGTTTGGTGGCGGTGAAAATCTTGATCACCAGCTTGATTATCCCTGGGGCTTGTCTGTAGATAGTGATGGTAACATTATTGTTGCTGATTCAAATCACAAGCTAATTAAGATCTTCACTCCTAGTGGCCGGTTGTTACGTAAATTTGGCGGAAAGCGCCTTTTAATAGATCCCTGTCACTGTATTCAAAAGGATGGATGTTTCACAGTATCAGACTTCGGTGAGCATTGTATTAAAGTATTCAACGCAGAGGGTGAATTTTTATATAAATTGGGAAAAAGGGGGAAAGGAGACGGGGAATTCAATAGGCCGCGTTTCTTGTCAGTTGACAAGGCAAAACAATTGGTTGTTTGTGATTTTGACAATGACAGAATTCAGGTGTTTGATCAGCTGCATGAAAAGTTCATCACAAAGTTTGGACAACGGGGCAGGAAGATTGGAAAGTTAAGTGGACCATTCTCTACTGCAGTTCTTTCTGATGGAAAAATAATTGTGTCTGATCGCTTTAACCACCGTATTCAGATATTTGAGGAAGCACTTTTGGCGAAGACGTTTTACTTGTGGTGGAACAAGTATCAGTTAATCATGGACATCAGAATGATGGAAAGGATGGCCATCCTGCATAATGATGAGGTGATAAAAAGACGTTGCCTTCGGTTCTGGGTACAAAGAGCGCGAGAAAAGCTGCACGAAAGAGAGCTTGAGGTCGAAGCAGATGATCATCAACATCGAAGATTGCTTTTGATGGCAATTGAAAGATGGAGAGAGTATAACAGAGAAATGAAACAAAGCCGTTTTGTACAGCGCTCATCATTGAGGCATTACTACATCCATCTTCTAAAGAAGACCTGGGGAGCTTGGAAACAATTTGTTCATCACAGGCAGGTGAAATGGCAGAAACAGGTGCGAGCTGATCTCCATCATCAACAACGTCTTCTGTCTGCTGTGATCAGCGCTTGGAAGACTTGTAAAAGCTACCGTCTCGAATTTTCGGGTGCTGTCCGTCCCTCACATACAGTGTACGTCTTCTTTATCACGACGTTCCTGTCTCCTGACTTTTCCGACAGGTTTGCCTTTGAAACATGGAAACAGAATGTCAAAGAAAACAAAGAAGAAAAGAAAAGCAAACACATGGCGAAGACTTTTCTTAATCAAACGCTGCTTTCCAAGTGCTTCTCTTGTTGGAGAGAATTCACGTCTCACCATGCAGTGAAGAAATGGCAGCAGTGGGAGCGGGTGCAGGACATTCAACGGACACTTGACAAAGGTAAATTACATCGTTCATTTCGCGCTTGGAAATCCTTCACAAGGAAGTCAGTTCACGACAAGATTCTCAAACACAAGGCTGACATCCATCATAACAAGACGCTGATGCGCAAAGCAGTGTTGACATGGAAAAGCTACGTTCACTTGTGTTTTAGAATCAAGATTCTCCAAAGACAAAGCATGTGGCTTCACAATCGAAGGATCACCGTTGCTTTCTTCAACAAGTGGAAGAAACAGCACAGTGAAGCAGTTCAAGAAAAGAGACATACAGTACTGGCATTGTGGCATTGGAGTATCAACCTACAGAGCAAGGCGTTTTACGCAGTCTTAGAGTACGCAGTCAGACGTAAGAGGAAAGCTGTTCGAATTGCCCGAGCTTTGGAAGAGCGACGAAGCAGGCTTCTGCGGACAGGAGTCACTCGGTGGATGAAGGTTGGGTTTCACCTGGCTGCGGAACGATCGAGACTGGCTCAAGAACGACAACTGGAGGCAGCTCACTCGGTTCACCGGTGTGTATATCGCTGTGCGATGCACTGGAGACGAATAACAGCAAAGCGAGTGCGGCAAAGAGGAGGGAGGCCTAGGCCGAGACCTGTGATCGAGACCAAACCTGATTGGCAGGTTACAAGTATCCCGCACCCAGTCCCTTCTCAGCAGCCCTCGGTCTACAGTACGGATATTAACAGCATCGTTTCAGAAGCTTTCAAGGAGCGTCCGAGACCACGAAAACCTGATTACTTAAGGGAGTCCTTTGACGTCACCCAAATAACCACGGGAAAAAGTCTTCCGCCGAGCGCGCCATCCACGCGTGTTACAACCAAAGGCGATGACGAGACAAAACCTCGCCCCACCCAACCCCAGCCGTGTTATCAAACAAGGAACAATATTCATCCCCACCAGAGGAACCCTCGGGAGGAGTCAATCGTGTTCCCTTCTTCTTCAGGGGAGGAATCGTTGGTTGTTGCGAAAGCACCGAAGGAGACTGGGAAAGATACATACGATTCAACAAAAGCCGCAACCAACAGCAAGCAACCGGGTGTCAACGAGACAGCAACAAAACCTGTTCAAACATCTGTCATTGAAGCGCTTGACAACACAAAACAAACAACAAGACACGATAGAAAAATCGTGTTATTGCCTCCGTCGTCCTTTACCCTGCCTTCTCGCTCTAAGGGATCCTCGCTGCAGGACTCTTTACCCCAGGGGGTGGTGGTGCGTAATTCCAACTCGACGCATCCCGCGTCTACTCCTCGCACCTCCCTAGACAGTCAAAAACTTGAGGCGTCTTCTCCAGGCACCTCGTCATCGAGTCGAGGCTCAGAAGAGGAAGATGAAAGGGAGGAAAAGACAAGAGAAAGGAATGGTGAAGAAAAGATGAGGATGGGGGAGATAATGGGGGAAGGGGAGGAAAGAGACAAGGGACATTCTGAAGGGGAACTGAAAGATGAGGCTGAAAAGAGTCAGCTAAGAGAGGAAGGAGATCTCCAGAGCAGGATTGCCGCCATGAAGAATACACTGCAAGAATTTCAAGATTTGAAAGCAGCGTATAATCATAAGAAGAGGCAGCGAGATCAGTTGTTCGTTTGGGTTCAAGAGCAGAGAGAGGAACTGGGTCCGAACTGCGAGGACGAGGAGCTATTACAAACTGAGAAGTGTTTGGATGAGTTAACCGAGGAAGTAAACAAGATGGCTGAAAGAATAAAACAAACTCGACCACTTGTTGAAGAAGTAGCAGCTAACATCAGACAACTCATTCAAAAAACTGGATTGGGATAG

Transcript

ANN04981-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A9CB34	Protein SFI1 homolog OS=Papio anubis OX=9555 GN=SFI1 PE=3 SV=2
A8K8P3	Protein SFI1 homolog OS=Homo sapiens OX=9606 GN=SFI1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003125 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00630 all species →	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF01436 all species →	NHL	NHL repeat	Repeat	Interproscan
PF17170 all species →	DUF5128	6-bladed beta-propeller	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR052270 all species →	Family	Centrosome-associated contractile fiber protein	Interproscan
IPR001258 all species →	Repeat	NHL repeat	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22028 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019902 all species →	Molecular Function	phosphatase binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24135	MORC; MORC family CW-type zinc finger protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.