Gene detail

Detailed information of ANN05071-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:27350716...27361976
NR annotation: CAH3025773.1, unnamed protein product, partial [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN05071-RA

ATGGCAATTCTGCGGTCAAACAAGGAGCAAAGAATCAAGCTTGAGGAGTTGAACCCGTTCATAACGTGTGAACTATGCAAGGGATATTTGATCAAGCCAACAACCATTGCCGAGTGTTTACACACATTCTGCAGGAGTTGCATCGTACAGAATCTACAGGACAGCGAAGAAAATATCTGCCCTCAGTGCTCCACGGTCATCCATGAAACAAACCCGTTTGAGATGTTAAGGTCAGATCAAATGCTTGAGGATATTATTTTTAAGTTGGTACCAGGACTGCAAGAAAGATCTACCAAAGAGCTTCGAAAAAAAGCACAGACTTACATATCGTCGCTGTGCAGTACTGATTCAAAGCACTGTGTTGACCTTAAACTACCGGCCGCCGTGTTTGAAACTTTGAAAAACGGCAATGGAGGGAAAGAGATAGAGAAGCTTACTGGCGCCGTGCTGTCGTTCAGCGACTCGAAAGTTTTCCTGCAGGGTGACGATCTTGTTGTCACGATGGCAATCTCTGAAATTGAGCAAAGGATTGCCGCGTTCGAACAACAACATGAACTCGATACTAGTTCTACGAAATTTGCAGGAGGCGATGATGTTGAGCACGATGCTGAAAACATTCCCGAAAATTCGACCGTGGACACAACAGACATTCCGCCTTCCATGCGCGAGTTTGCGCGCAAACTTCATTACCAAGACAAAGACATTGATGCGGTTGTAAGAACATTTGGCACAGAAATCAACATAAATCAACTTCTTCAAGAACTTGTTAAAAATTCCACGTCATCTCTCCAGCTCAGCTCCGCTTCAGAGGACACTAATTTGCTTCCTGTTGCACGCGGAAGTTGTTCCCCATCTTTGCTACCCAGAGAAACACGAATCTTGTACCCAAGAGGTGCCGGCGGGCGTACGATTGAGACCCGAAAGCGGGAGTTTGTCGAACAGGCAGATCAGCACGTGAAGCCGTTCCAAGCGCCGGATCATTTGCGGCCAATTGTGATCGATGGCAGCAATGTGGCCATGAATCATGGAAACCAGAGAGTGTTTTCCTGTCGCGGGATAAAACTTTGCGTTGAGTATTTTATGAGGAGAGGACATGATGAGATAACCGTGTTCGTACCCATGTGGAGAAGAGAAAAGCCTCGGCCCGAGAGTCCGATATCGGAACAGGAAATCCTTGATGAACTCTCCAGACAAAACGTTCTAAAGTTCACGCCTTCTCGATGGAGTGGCAATCGCCATATTATTTGCTACGACGACAAGTATATCGTCGATTTAGCCGATCAAAATGGCGGCATCATCGTTTCCAATGACAATTTTCGAGATCTGCACAAAGAGAATCCACGATGGAAGGAAACCATTGAGCAGCGGTCACTGGGGTACACTTTTGTTGGAGATCGTTTTATGCCCCCTGATGATCCTCTGGGACGTCGAGGACCCTCCTTGGACGACTTTCTTAGAAAAGGATCAGCCACGCACCCCAAAATTTGCCCGTATTTGAAGAACTGTACCTTTGGTAACCGGTGCAAATATTACCACCCTGAACGAGACACGCAACGACAACAGGAAAAAGCTGCGGTGAGGACCTCCCCGGAGAACCCCGAGTCTTCTACAACCAATTCTGTGGAGTCTAGTGCTCATACGTCAACTAGAACTCACCATGGAAACACTGTAGGAGACCCTAGGGTTTCCACGCAACCTCAACCTGTCCAATCGCGTTTGGAGCCTCACTGCACTGTAAGTCCATCGACGCCAACTGTGAGGGATCCGAGGGTTTCTATTCCGACTTTCCAGTCTCAGTTCGAGAAACGTGGACGGTCCCACGAAATTGGAGTCCGTGGAAGTGGACAAGCAACGGGCGCCCCGTACGATCACACCCGCGTTCCTTACGGCGGTGAACATTACTACCCTGGGTATTATGAAGGAAATGTCTACAACGATTACCTTCATCCAGTGACTTCGGATTACACGGCCAGAAACCTGCCGTATCAAGAACCTCCGCGCATTTACCACCACGACATGGGCCAGTTTTGTCCCGTTCCACCCGCCCAATGGCCGCCGTATCCTCAACATCCTTACGCTGCACCCGCGGGTTTGGGATATCCCGCGGGTGCGGGACAATGCACATATGCTACAGGCAGTTATTTCGAGCCCCCGCCAGCCCCTTTTCGTTGGTGTCAGGGACACCAACCGGATCAAATAGACAGTAGCAACTCGCCAGATGATAGCATCAGCAAAGAAAAATTTGACGATCTAGTTGATACGCTTAAAAACGTTTTTGAGGGGGATCAAGAGACAATAATTCATGTTCTGCGCACGCATCCGAAAGAGTGTGCAGATGGTGATATCAATAAACTGGCGGAAATTTTGCTGGAGCCAGCTATCCGTCCAAACTGA

Transcript

ANN05071-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5D1E8	Endoribonuclease ZC3H12A OS=Homo sapiens OX=9606 GN=ZC3H12A PE=1 SV=1
A6QQJ8	Ribonuclease ZC3H12A OS=Bos taurus OX=9913 GN=ZC3H12A PE=2 SV=1
Q5D1E7	Endoribonuclease ZC3H12A OS=Mus musculus OX=10090 GN=Zc3h12a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001621 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11977 all species →	RNase_Zc3h12a	Zc3h12a-like Ribonuclease NYN domain	Domain	Interproscan
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF18039 all species →	UBA_6	UBA-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021869 all species →	Domain	Ribonuclease Zc3h12a-like, NYN domain	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR040546 all species →	Domain	Rege-1, UBA-like domain	Interproscan
IPR051101 all species →	Family	ZC3H12/N4BP1 Ribonuclease and Regulator	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12876 all species →	N4BP1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0036464 all species →	Cellular Component	cytoplasmic ribonucleoprotein granule	Interproscan
GO:0090502 all species →	Biological Process	obsolete RNA phosphodiester bond hydrolysis, endonucleolytic	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18668	ZC3H12, MCPIP; ribonuclease ZC3H12	EC:3.1.-.-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.