Gene detail

Detailed information of ANN05583-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:34010003...34018171
NR annotation: CAH3187927.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN05583-RA

ATGAGTGCAGAAGGGGCGTCGTGTGAAAGGTTTAGAGAGCCGAAAACCTTTTGCGAAGAAGAAGAGTTAGTGGAGAAAGCTGTTCCCTCTTCGACAAAGTTTAAGAACAAGTGGGCCCTGTCAGTTTTTGGTGAATGGCAATTTGCTCGTACGATAAAAGTGCCCGTTTTAGATCCAGGAGGCCTTTTCAAGGACTATGACTTACATAAGGTCGCGACGCTCTCTACAGGTATCGAAGAAATGGACGCGTTGAGTCTAAATTACTGGTTAAGCAAATTCGTTATGGAAGTGGCTAAGAAGACCGGCGAGAGATATCCTGCGAAAACTATTTACGGAATGGTTTGTGGTATCCGACGCCATCTGGAGGAGAAAAATGGTGCTGAAGCGTTAAATCCTCTTAATAACAGCGATCGAAGGTTCACTCTATTTCGTCGAGCATTAGACGCAGTAATGAAAGATGCCACAAGAGAAGGCTTACATGTGAAGAACAAGAAAGAGGAGAAATTACCGTCCCACCTAAAATCAAAATCAAAAACTGATAATCACACCTTTTTGGCAGGGCCACCTTCCCTGATAATTAATAACAACGCTTTTGATATTTTAAGGAAAAAGTCAAAAGACTATTACACACTGATTATAAGCAAAAAAGCACAATTTTCTAAACACTCGTTAGTTTTCAAAACCGAAGATCAATTAGAAAAAGAGTTTATTTTACCTCATGTTGTGTGTTCCGAGCCTTATGTTAAGGCTTTTCAATACAAGGTCCTTAACTCTATACTATACACTAATACCAAATTATATAAGATAGCATTTGTTACAGACAATAAATGTTTCTTTTGTAAGTCTGAACCGGAAACCCTGTTACACCTTCTTTTCGACTGCGTATACTCGAAACGTTTTTGGAAAGATTTTGAATTTTATTTTTATTCTTTATCAAAAGAATTCTTTCATCTCAGTTGGCAAGATGTTTTAATAGAATGCCCCTTACTGAACTACTTTCTATTGATAGCTAAATTGTATCTGTGGGATTGCAGAAGATCTCAAATACTCCCTTGCTTAACTGGGTTTAAGAAAGAGGAGAAAGAGTCTGTCACAGCGGAAGAGGAGGAGTTATTCTGGAATTTAAATCTGTTGGGAATGTCAACAGCTAAAGGAGGCGAGCATAAAAGTCTCGTGCTCACTAATTTTGAAGTAGGATCCAATTTTGTGAAATTTGAGGAAAATTCATGTAAAACGTTTCATGGGGGCTTGACCGACCTTAAGTATATTCCCAAGGTTGTTAAACATATTTGTCATCCTTTGGGAGAGACGCATGAACGGTGTCTTGTGGAAATGTACAAATTATATATTGGGTTATCAAAGCTTAGGTTTGAAAAAGCTCCTGTGGGTATAAACAAACTAAATGATATTTTGCCTGAAATGTGCAAGGCAGCAGGTTTAAAGCGAAAGACCAGTCATTGTCTTCGTGTTACTTGTGCATCTTCTTTGTTTAATGCCGGTGTAGAGGAGAAATTGATACGGGAAAGAACTGGTCACCGTTCGGACTCTTTGTTCAAGTATGAAAAGCCTAGCAAGGAGAAAATTACAGAAGTATCGTCCGTATTGGGGCCTAGTAGAAGTGCTACTGAAGTGAATATCTCAGAGGAGAAAGATTTAAGTTGTTTGACGAGTTCTGATGCTCAAGATGTTGTAAGTGCAGGACCACTTAACAGTTGTTCTTATGCTAATTGCTCTGTTAAAATCAAGGGGCAAATAGTGGGAGCGAGCATAAAGTCGACAAGGGGGGCAATCTCGGCAAAGAAAAGTTGGGTAAAAGTCCACGGTCCAGTTCCAAACGGCCTTGCCAATGCTGGATCCTTGTTGGGTAGGAAAAATCGGAAGCTTCTCCTCAAGGAATTTAGTGCTCCGTGTGACTACGGAGTCTTCACTGCAAGGTTATCCTCAGACTTCACAGGAACGCTATCGGTCCGTTTCAATTTTCGCGCGGATATCGAGGCAATAAAGAACGCCTGGGCAAAGCCCGCAAAACCTGAAAAAAATTCAGGTTTGGAGGGGCATAGTGAGCATAACCGCACGTACGCACGTGCGTCCCTCGAAAACCTAAAAAAGATTTTTGGCGAAAAGCGACTTTTTATTGCTGCTATTTTACGAGAAGAAAACTGTGTTGCTGCCGCAGTTGAAACTCTGGCGCATCTGGATTCAAATCTCCAAATCCGCAACCAGTTGAACAGGGCGTTCTACAATGTACCCGTTTCCTGTCAATATCTTGAATCCTCGCAGAATGCCATCCCTTCCCTTGATGTGGCTTTCAACTCTTCCAAGTTTCCACTTTCCAGTGTTCTTAATGGAGTCTTTAATTAG

Transcript

ANN05583-RA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00589	Phage_integrase	Phage integrase family	Family	Interproscan
PF13966	zf-RVT	zinc-binding in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR002104	Domain	Integrase, catalytic domain	Interproscan
IPR052787	Family	Mitochondrial antiviral-signaling domain-containing protein	Interproscan
IPR026960	Domain	Reverse transcriptase zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21446	DUF3504 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan