Gene detail

Detailed information of ANN05630-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:34919108...34940048
NR annotation: CAH3034810.1, unnamed protein product, partial [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN05630-RA

ATGAGTACTCCAAAAACAGAGGATGGCGAAGCGAGCGAAAGAGAACTTCTTGTAGATGACATACAGCGCCTCCGCGAGGTTCTGCATATTTCTGGTGGCACCGACAAAATTTCCTCTGACGAGGAGGTAGACGACGGGTCCGAAGAAGACGAAGAAGACGAGGATGAACCACAGAAATGTGGAGAAAGTCTGGCAGATAGTACCTCCACCAACAAATCACAACTCCAGAACCTGACCTGCCTTTCACCTCTTAGTAGCAACAATGCCATTCCAGGAGCAGCATGTAGAGTTGAAAATTCCAGAGAGAAATCACCATTAAGCACAAGGCAAGAAACTGTTTCAACAGCCAGTTATGGTTCCCTACTTGAACAAGAAGCTGAGAATAACTTACTGCCACTTCAAAGTGCTGTAAACACATCCTTAGATGAATACACTTTTACTGAATTACAACCAGTGAATTACCAACCATCCACATCTACATTTCCCACAAGTTATAATCCATTCATTGGTGATCCCTCTTCAACTGTTAACGCCTTTGCAAATATTCCGAATGCAAATGTTCCCGCAAGTGTTCCTTCCACAAGCAGTGCAGATCAGTACAGTGATGTCACCTGGCTGATGACAACAAATCAGCATCACAATGAAAATGATGATGATGGGCAAGAAGAAGAAATAGAGGAGCTGTTTTTTGAAGGAGATGAGAAGAGTGATGATGACTTTGAGATGCGCAGTGAAATCCAACGGTGCTTGAGTTTAAATAGAGATTACCAGCTGGCATTGTTGGATGAACTTGAACGAATAGAACTGGCTCTGGCAAAGAACCGTGAAAAACAGTCTGGATTGCATCAGATGAGAGCAAGTAAAGATGAAGGGAAACCTGAACCTCAAACACTAATCAAGTTTGGTAATCCTTACTTCAAAGACACTGGCGGTGTGGGACCACCTGACAATGAGGACACCAAAGCAAAAAGACAGACCTGTCAGATTGGAGGCTACCAGGTTAAACAAAAAGCCTGGAATGACAAAGAAAAAGATGGCTTAGCTGAAGGAGTAAGGATGCAAAATCTGGAAAGCAAACTCTCACCAGTTCTGCAAAAGATACAAAAGTTAGAGCTCAAGAACAATAAGACAAATGTAGAGTTGAAGGAATTGGAAGATTTGAAGGCAGAGAGTTCCAAAATCAAAAATCTTCCAAAAGAGAAACTGGCATATGACTTGGAGGGCATTGACTGGGACAGAATCAGCAGTACTTATGTGCCAAAACGTTCAGGATTTCAGTGCCGTTTACAGTGGTGCAACTTTGGTCACCCACTTGTGAACCGAGCCCAATGGACTAAAGAAGAGGACAAGAAGCTACTACAGCTCGCCAAAGAACCTCAGAACACCTGGGTTACTATTGCACAGAAACTTCAGACCAAGCGCACCCCTATTCATTGTTATGAGCGATACCAAAGAAGCTTGAACAAAAACCTTTTGAAGAGTAAATGGACCCCAGAAGATGACAAGCAGCTGCTTGAAGTTGTGCGTATTGTTGGGCTCGGGAACTGGCCAAGAGTGGCTAGCTTCTTGGAGGGTCGTCAGGGAGATCAGTGTTTGCATCGTTATACGCAGACTTTGCAGATGGTGAGGAAAGGCAAGTGGACCGCAGATGAAGACGAGCTTCTCAAGAAAGGAATTGAGAAGTACGGGACAAGTTGGAACAAGCTTTCCGAAGTGGTTCCTGGCCGATCAGGGCCACAGTGCAGGGAAAGATGGGTGAATGCCTTGGATCCTAAAATAGACAAAGGACAGTGGACTCCAGAACAGGATCAAAAGCTGCTGGAAAATGTTGAAATATTTGGTAAAGGAAATTGGTCCAAGATTGCACGAGCCCTAGGAAACCGGACTGATAATCAGTGTTGGCGGCGGTGGATTGTTCTGCGCAAAGATGACTTTTTATACTACCGCCAAAATACTCTGCGAAAGAAAAAAGAGCTGGTTTCCAACTTCACTGGCCGAAGACAGGAAAGACCAGCGCTGGAACCTGAGGATTTGGACATTCCAGACGTGCCTCTTGTGAGGAAAGGCAAACCTGGTCGTGTTCCACTCCCACCTGAAGTGTCTCGAGAGAGGCGTCGATTAACCAGGGCAAAATCCAGGGCGAAAAAACGAGCAGAGAAAAGGCTAGCTGAAGAGGAAGCCAGAGAAAGGTCTACCAGGAAGAAACCACAAGTAAAATACACAGAGAGTAACGAGAGCGGGGAGGAAGAGGAGGAGGAGGTGCAGATGGAAGGTGCGATGGATGGTGATGAAGGCGCGGTAGAAGCCACAGAAAAGAAGAACCCTCGAAACAGGAAAGCGGGGAGAAACAGAAGCAGAATGCAACAGCCTCATCACCGAAATCTTATGAAAAACAAGCAGCTGTCCAAACGGAGGGAAGTCGCGAAAAAACGACACCAACGTCAAACGGAAACCACTGAAGGGGAGAAGACGGTCACGGTGTCCGGGGCTTTAGGGCCTTTCTCTCTTCTTTTACAGGCATTCAGCATCGATATTCCTACTGTTCTTCAAGCCATTCAAAATACTTCAACAACGTCATCCACCTTACCTCCCCCCTCGGGCACAAATGTCTCCTCAGCTACTGGGAGCACTGCAGGGGTAGAGAATATTACTCCAGGAAATCAACACGAATTGCAAACAAGTGGGAGTGCCGCAAACCAGGATAGTCAGCAGTTTCAAACAGATACTAGCGGTGACTCAGCTATTCCCAAGTCCTCTGCTAATACCGAGACAGGAGTTGATGATGTCACCCCTGTCAGCCAAACCAAACCAGATCAGGCGAATCAAGAACCAGCGCAGATTTCAAGCGAAACAGAGAAGCGCAATGAAAATGGCGGCGAGCCAGGGGGTAAAAGCTCTGTTTCAGATTCAACTGTTGGCTCGCAAAATGCTATTGTTAATAACATTGAGACGTCAAACGTGAGTCGAGCAGAGACTGGAAATGGATTAAATGGGGCTGCGACTGCTTCCACAACAAACCAGACTTCGCAGAGACGCGCGCCAGCAATTCCTCCCCTTCCCCCTTGTTATACAACACTTAGAACTTTTAAATCGCTTCAGATGCTTCGTCCTCAGCTGCAAAGGATAGCTGCCATGTTAAATCCTACTCCTGGCGGTAGCACAGCGGACTCGCAAGTAAGCCAGCCATCAGCAGCAGCGTGTCCAGTGGTTTCCTCTGGTAGCCATAGTAACAACGTGTCGAATGTCACGTCTGAGGCTCATGATGAGTCAAGTGAGGGCCAAGCCCAGTCTTCTGAAAACACAAAGCGGGTTACAGGTCAAAATGAAAGTGTGTTGTCAGGAAAAGACAATGAAGCTATAAACACAACACGTGATAATAAAACCACGGCAGGTGAAGATCACGTGGTATCTTCTGGGTGTACACGTGATATACAACCTAGTAAAGAACATTCTGCCTCAGCCGAGAATGTTGTTACGGACGATAGTTCAGGGATCGGTGGCACTCAGCTATCTGATGGTAATACAGTGTCTGGCCTTGGGCAGGCAGAAGCTTCAGAAGCAATATCGCCAAGCACCAGCTCCCAGCTGGATAAAGACACCGCAATCAATACAGGTGTTAATATTGTTTCTACTTCAACTCCTGTGGAGAAGAACGTTACACCGGCCGTGACAGGAACTCGTCTTTACCGAAACTCTTACGAGTACAAACTGTTGTCGTCGCGATTCAATAGTTTATTCTTATGGCCATCTCTCCTGTCTAAAATTCCCGTTAAGTTTTCTTCTCAAATTGGACCTGTCTTTGTCGAACGACATCCTCCGCCTAAAGGAGGCCCCGCAAGGCAAGTTGTTGAAGAACTCCGCGCAATTCGGAAACGAAGACTGACTACAAAACCGCCTCCATCGGTTAAACCTAAACGTAAACATCCTGGTTTAGCGGCAGTCAGGATGGCTTCATCGACGTCTTTCACCACCCCAGCACAGCAGATGTGTACTGTGGGGCAGAGTACAGCGATTAAGATAGAGACCAACCGCCCTGCAAAGCAGTCTGCTGTGGACCCTTCTGGGACAAATGAAGTAGTTGTCGCTGCTTCTCAACTGGTGTCGTTACAGGAGACGTCAAAGTCGTTGTCAGTGTCCGCTGGAGCGGCTAAAAGACCTTATAACACTCGCACGAGCAACCGTAAGATCATTCCAGTGAAACGAACGAAAAGGATCATTGATAGCTCGAGTTCTTCCGAGGATGAGTCACTTGTCATCGATGACGAATCAGATGACTCAGATTTGAGTGAAAGCGAAGAGCGCCAAATCACACCTCAGGTGGTGAGGAACACCAGACAGGCTTCTGCCAGGAACTTATCAAAATCCACAGGTGCTAACTCAACATCATGTTCCCGAGCGACTTCTACAATCACAGCAGAAAAAACTAGCGATACTAATGAAGCTACAACTACTGAAGTTGTCATGATCTCATCAGATACCGCCAGTGATGCCCAGCTTTCCGCCCAAGCAAAAGCTGGGCAGCGGTCAGACGCAGCTGCTAATCAGTCCAGTGACAAGTCATCGCCATCCAGTTCCTCCAAACGGAAAAATCCGCGACCCTTAAAAAATCGCGGCGCTCGCTGGAGAGCTATGCTTCCGAATCTGCCAGCCGATGACAGCGATACGCAGTAA

Transcript

ANN05630-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q54NA6	Myb-like protein L OS=Dictyostelium discoideum OX=44689 GN=mybL PE=3 SV=1
Q6R032	Transcription factor MYB3R-5 OS=Arabidopsis thaliana OX=3702 GN=MYB3R5 PE=2 SV=1
Q05935	Myb-related protein A OS=Xenopus laevis OX=8355 GN=mybl1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001352 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13921 all species →	Myb_DNA-bind_6	Myb-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR017884 all species →	Domain	SANT domain	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan
IPR051575 all species →	Family	Myb-like DNA-binding	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46621 all species →	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001006 all species →	Molecular Function	RNA polymerase III type 3 promoter sequence-specific DNA binding	Interproscan
GO:0019185 all species →	Cellular Component	snRNA-activating protein complex	Interproscan
GO:0042795 all species →	Biological Process	snRNA transcription by RNA polymerase II	Interproscan
GO:0042796 all species →	Biological Process	snRNA transcription by RNA polymerase III	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN05630-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.