Genomic Location: Scaffold_4__1_contigs__length_64434164:47871116...47887311
NR annotation: XP_020626464.1, parafibromin-like [Orbicella faveolata]
| CDS | ||||
| ANN05660-RA | ||||
| Transcript |
| ANN05660-RA |
| Protein |
| ANN05660-RA |
| Uniprot term | Description |
|---|---|
| Q5ZLM0 | Parafibromin OS=Gallus gallus OX=9031 GN=CDC73 PE=2 SV=1 |
| Q6P1J9 | Parafibromin OS=Homo sapiens OX=9606 GN=CDC73 PE=1 SV=1 |
| Q8JZM7 | Parafibromin OS=Mus musculus OX=10090 GN=Cdc73 PE=1 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16050 | CDC73_N | Paf1 complex subunit CDC73 N-terminal | Family | Interproscan |
| PF05179 | CDC73_C | RNA pol II accessory factor, Cdc73 family, C-terminal | Domain | Interproscan |
| PF03372 | Exo_endo_phos | Endonuclease/Exonuclease/phosphatase family | Domain | Interproscan |
| PF00078 | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR043502 | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR036691 | Homologous_superfamily | Endonuclease/exonuclease/phosphatase superfamily | Interproscan |
| IPR000477 | Domain | Reverse transcriptase domain | Interproscan |
| IPR032041 | Domain | Paf1 complex subunit Cdc73, N-terminal domain | Interproscan |
| IPR038103 | Homologous_superfamily | Cell division control protein 73, C-terminal domain superfamily | Interproscan |
| IPR031336 | Domain | Cell division control protein 73, C-terminal | Interproscan |
| IPR005135 | Domain | Endonuclease/exonuclease/phosphatase | Interproscan |
| IPR007852 | Family | Cdc73/Parafibromin | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12466 | CDC73 DOMAIN PROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity | Interproscan |
| GO:0000993 | Molecular Function | RNA polymerase II complex binding | Interproscan |
| GO:0006368 | Biological Process | transcription elongation by RNA polymerase II | Interproscan |
| GO:0016593 | Cellular Component | Cdc73/Paf1 complex | Interproscan |
| GO:0032968 | Biological Process | positive regulation of transcription elongation by RNA polymerase II | Interproscan |
| GO:0034402 | Biological Process | obsolete recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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