Gene detail

Detailed information of ANN05711-RA in Montipora grisea

Genomic Location: Scaffold_4__1_contigs__length_64434164:49574128...49602770
NR annotation: XP_029192656.2, WD repeat-containing protein 48-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ANN05711-RA

ATGGCGGCGACAGTTCGACCACCATCAAGCCACTCTCATGTGCACCCGCACAATCACTCCTTAACAAGGAGAAAAGTCACCATGTCATTTGTGATCAGAGACGAGGAGGAACCTCTCCACCGATCAGGAGTTAACGCTCTACAACTGGACAAAAACAGCGGGAAGCTGTACTCAGCTGGTCGAGATTCTATCATTCGATGTTGGAACACGAATGTAGAGAAGGATTGTTATGTGGCATCTTTAGAGCATCACACAGACTGGGTGAATGATATAGTTCTATGCTGCAATGGTAGAATAATATTATCTGCTTCGTCCGACACAACAGTCAAAGTCTGGGATTCAACTCGTAGCTTCTGCATGTCAACTCTTCGCACCCATAAAGACTATGTTAAAGCACTTGCGTATGCTAGCTGCAAAGAATTGGTTGCATCGGGAGGACTAGATCGACAGATTTTTCTTTGGGATGTCAAAACGTTAACAGCCCTCACAGCCACAAACAATACAGTTACAACGTCATCTTTGAATGGTCAGAAAGACTCAATATACAGCTTGGCTTTGAACAGCATAGGCACTGTACTCATCTCTGGATCAACAGAAAAGATTTTGAGAGTATGGGATCCTCGCACATGTGGAAAAGTAATGAAACTCAAAGGCCACACAGACAATGTAAAATCCATCATTATCAATGATGAAGGAACCCAGTGTCTGTCTGGAAGTTCAGATGGAACAGTGCGGCTATGGTCATTAGGCCAGCAAAGGTGTATCACCTCATACAGAATTCATGGTGAAGGTGTGTGGGCATTATGTGCTGATGAAAACTTCACTGGGTTCTATTCAAGTGGTCGAGATAAAAATGTGATGTGGACAGACCTGAGTGTGGATGATTCATCCACTCTTTTGTTCATGGAGGATGCTCCAGTTTCAGATCTGGAGCTCTGTCCAGATCCTCATTCTCTTTGGGTTGCAACAACTAATTCTACTATCAACAATTGGTCAATAAAGATCCCTAACATAAGTGATCAAGAGAATATGGACGCCAATGAGTCAGACACAGATCCTCAGCCAACTTGTCTAATGCCAAGAAAAACCTTACCAGGAGCACCCAGCATACGGAAGTTCCATGTGTTAAGGAACAGGCGGCATGTGATTACCAAAGATTCGGAGGATAAAGTCACAGTGTGGGATGTGTTAAAGGCTTGTAAGGTGGAGGAACTTGGCAAGGTAGACTATGACGAAGCTATTAAGAAAAGAAGCGAGATGGTGTACGTACCCAATTGGTTTTCAGTCGATATTAAAACAGGGATGCTAACGATAAATTTGGAAGAAAGTGACTGTTTTGCTGCGTGGATCTCAGTTACGGATGTAGCAGGCTTAGAACCTAAAGTCATTGATGGAAAAGTGCTTGCCTCAGATATCAAACATGTAAATTATGGAGTGTTGCTGCTGCAAGCGTTACTGGAGTATTGGCCAGAGACTTACTCAGGGACAGTGGATGATGCAGATCAAGAAATGGCGCGAGCCGATTCGCCAGGTCAGCTTGAACTGCTACCCTAAAGTGGAGATGCTAGTGCGAGTGAAGTCAATCTCAACCTCGAATCTCGTGTAATGACAGGGAATTGGTTTTTTAGCATTCCTGAACACACGCCACTTATCTTTACCGAATGTAGCGGAACAGGCAGAACTCTGTTTAGGCTGCTGGTATCTGATGCATGTGGAGAAAATGAAGGTTACCTGTTGGCTGAGACAGTGCCATACTGGGCTGTGGATGTTACAGTCAAGAAACTTTCTCCCAAGTTTAACAAGATAGCATTCTTTCTACAACCGCATTCGTCGAGTTCATCCAAAGCATTGAAAAAGGATCGTCTTTCAGCCAGTGATATGCTCCATGTTCGTAAAGTGATCGAACACGTTTACGAGAAGGTACTGGGGAACGACAACAGCGGAAACTCGAGCAACCACGCCGATAAAGAGCAGGCCGGGCCACCAACCGAAGTAGATTTGGCGGAATTAGGTGCATTAGCCGAGGCTCGAGTGGAGCTGCTCTGTCATGAACAGGTGCTGGATCCGAACATGGACTTGCGGACAGTACGCCATTTCGTTTGGAAAGGCGGATGCGATCTGGTACTACAGTATAGGATCATGAAGTAG

Protein

Uniprot

Gene family

Uniprot term	Description
Q8BH57	WD repeat-containing protein 48 OS=Mus musculus OX=10090 GN=Wdr48 PE=1 SV=1
Q5F3K4	WD repeat-containing protein 48 OS=Gallus gallus OX=9031 GN=WDR48 PE=2 SV=1
Q32PG3	WD repeat-containing protein 48 OS=Bos taurus OX=9913 GN=WDR48 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR051246	Family	WD repeat-containing protein 48	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19862	WD REPEAT-CONTAINING PROTEIN 48	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan