Gene detail

Detailed information of ANN05869-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:39000590...39018350
NR annotation: CAH3043343.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN05869-RA

ATGAAACGGCCAAATGGATTACAGAACACAGATGTTAAGAAAGCCGAGAAAAGTGGTTTGGCTACGTTCGCTCTAGTGCACAACCTTGTTCGTCAACTCACCTCCATTGATTTAATGTGCTTCTTCATAATTTTCGTTTCAGGGCAAAATCTATTGCAACGCGGAAAGGTCAACTTCGTCGTGTCACATCCTGCCTTGTTCCATTGCGCAACCGTGAGATACCCTCGGATATTTTCTAGCTCTGGAAATATTCGCGTCCTTGCATCCGTCAGCCATGAAAACGAGCCGCCCAGTGTTCATGATTCCGCAGTAGTGTGGACCACAGAAGTGACGCAGAATAATTTCCGTGTTTGTGTGTTGGAATCAGGCCTTGGTTCAAATGGATCTGTTGTTGTGAACTGGGTTGCGTTTCGCGGCACGCCTTCTGGAGCACTTGACGGTATCGCCTCCTTCAATGCATTCACCAGCGGAACACAGTGTGAAAGGGTTGACTTTGCCCAGCGATTTCCTTCTGTCCCAAAAGTGCTAGCCACTGTACGTCACGCCAGAAGCACCAGACCACAGGATGCCATGAACATGTGGATAGAAGAATTACGAGAAGATCATTTCCGAGTCTGTATCCGAGAAGTGAAAACATTTGACGGAAAACATCAGAATCTGCAAGTGGACTGGTTGGCATTTACGCAGGGAGTGAGTCAGGTGACATTCTACGGAAAACTCCAGTTTGAAAACAAAGGGGCTCCTTTGCAACAAGACAACTTCGCCTTCTGCAAGGTTTTCAATTTTACTGAGATGTTTTATGCACCTCCTGTTGTCATGGTAACAGTCAATCATCGTTACAACAGCGGTAACATCTACTCTGTTAAGCCAGAGAACAACGTTCTTAATACCTGGATAGAGGCAAGTTCCTATTTTCAATTCAACCAAAAAAATTTCTCTGTGTCTAGATACATGGAAATTACGATTTCGTCTTTTCGCGTGTGCGTTAGAGACTTGGCAGGAATGGCGAAACAACATGATCCTGTTACTGTTGATTTTGCAGTTATTGGAGATCTTGATCCCTGCATCAATGTTTCCTGTAAATACTTTGCTGCATGTAAAGCGTTCGGCCCCAGGGACGCGCGCTGTCTATGTGTGAATAACTGTCCTTCATTTGAAGACCCTGTGTGTTCCTCCAGTGGATCCACATACGATAATGTATGCGTGTTCCAGCGAGAAATGTGCAATCTGAAGGCGAACTTCACAGTCTATCATCCTGGAGAATGTACAGGATTCCCTTATCAAAAGGGTCGCCATCGCCTCGGCCACTATCCAACTTGGGCAGAATCAGTTTGCGAACAAGTTCCACTGGATCCTTACGTCTTTTATCCTGACAAACCGGTTCACATACAGGTTTCTGTCAATCACGTGAACTTCTCAGATCCCGCATATGTCCACGAAGCAGTGGTTGCTTGGGTTGAGGAAATCCTTGAAAACAATTTTACAGTTTGCGTTACACAGGCTGGGAGAAACGAGAAGAGAAATGGAGAAACGTTTGCCACAGTTGACTGGCTTGCCTACCAGGGGGCCCCTGACGGGGGAGTGTCTGGTGAAATAGACATGCCAACTTGGTGGACTGGAACGACCTGTCGTTCAGTTTCACTTCCCTTGGGAAAATTTTATTCAGCCCCCACAGTACTAGTGTCAGCAGGACATGAAAGGCGAGGTGTGAAGCACGATGCTTCTTCTCTTTGGGTTGAAGACCTGATGCCAACTTCCTTCAAAATCTGTGTCAGAGAGTTACAGAACTTTGACGGCGCTCACCAAGGCATCCATGTTGAGTGGATAGCATTTGAAGAACTTCATCGACCTTTGTTTAGAGAGCACGGTGCTGTTTACTTTTCAAATGGAAACCAGCCATCACAAGGCTTCAACTATGCTTTTTGCCAGGATGTTGTCTTCGAAAAGCGCTATAACGACACTCCAGACGTTTTGCTGTCTGCAAATCACTCTACAAGTGGAAGGAACCTTGATCCTATATACAACTCTATATCAGCCTGGGTTGAGTACATAAACAAGACGGGCTTCAGAGCTTGCGTGAAGGAGCTGTTTGTGCAGAAACATGACCCTCTGTCAGTCTCTTATGCAGTTATGCCAGATGTCTGTGATCCCGGGTGGAGTTTCTACGATGGTTCCTGTTATTTGACAAGCCAAAAGTGCGAAACATGGTCCAAAGCAAGTCAAATCTGTCGAGCTATTGGAAGCAATCTAGCCAGCATCAAAAGTCAGGAAGAAAATGTGTATGTCCAGCATAGACACAATGGAGATAAGGCGTGGATCGGTTTAAATGACATCACTAACGAAGGATTATTTACCTGGGTGGATGGATCTCCTTCGAAATTCCGCTTTTGGGCTCAAAACCAACCAAACAACTATAGAGGCGAGGACTGTGTTTACACCCTCGGGGTGCGGCATGGGTACAAGTGGAATGACGTGAACTGTTCTGCTTGTCATCAGTACACCTGCGAGAAAGATTATGACGAATGTCTTAGTAGCCCGTGTTTGAATGGAGGTAGCTGCGTGAACGGCGAAAAGAACTTCACCTGCGTCTGTCCTCGGACACATAAAGGATGGACGTGTCAAGAGTTTGACGAATGCTCCAGCAATCCCTGCCTGAATGGAGGTACTTGCTCAGATGGAAACAAAAACTACAAATGCACATGCCCTTCACCGTATTTTGGGAAGCGGTGTCAA

Transcript

ANN05869-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28670	Aggrecan core protein OS=Oryctolagus cuniculus OX=9986 GN=ACAN PE=2 SV=2
Q28343	Aggrecan core protein OS=Canis lupus familiaris OX=9615 GN=ACAN PE=2 SV=2
Q9DEA1	Snaclec agkicetin-C subunit beta OS=Deinagkistrodon acutus OX=36307 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000073 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR051004 all species →	Family	Dendritic cell-specific ICAM-grabbing non-integrin domain-containing protein	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR037221 all species →	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR018378 all species →	Conserved_site	C-type lectin, conserved site	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22802 all species →	C-TYPE LECTIN SUPERFAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0044419 all species →	Biological Process	biological process involved in interspecies interaction between organisms	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN05869-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.