Gene detail

Detailed information of ANN06007-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:41569483...41592135
NR annotation: CAH3191165.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN06007-RA

ATGGAATTCTCGCAACAGGTTGCTGACTTAAAAACTTTGAAAGAAGCCCTGATTAGCAATAACCAAGATTTGTGTTGCAAGTTAAGGGACAAATATTCGCGAAAATTAAACCTTAACCAGTCCTTCCCGAGATCTGATAAGCTAAAACAAGACCAACTGGCACAGTCCCTTATTCCGTGTGATGCACCAACTGGCCTTATTGCTCATGAAGTCGCTGGGGATGGAAATTGCCTGTACCACGCCATTTCTCTGGCCCTTGTGGGTACAACAGAATACTCTACTTGTCTTCGTATTCTGACAGCCATTGAGCTGTTTGAAAATACTGCCTACTATGGAAACCATCCGCGATTCCGGGAAGCTCTTCAATGTGGGTGTCCCTTTGGAGAAGTCACCGTTTTCACGCTCGCACTGAAAGAAAATGGAATAGCAGAGTGGGAGCACAGTGGCAACCGTGAGTCTGCTATCCAGAGTGAGGCAATTGGGGGATGTCAGCTAGGTGAATGGTCGTCGCTGATGCACATCATGGCACTTTCCACAGTGATTTCCAGGCCTGTCTTTACAATCTATCCAAGTTGTGCAGAAGCTATTCGCCCCCTCTTACATGGCTTAGTGAAACCACGTATTAACAGGCCAGACGTGTTTTCCAATAATGATTGCTTTCATATTCTGTGGTCAAGGGATGGTGGATTAGACAGCCGCCCAAATGCTATTTATGTTCCTAACCACTTTGTCCCCCTTTTTAAAAAGGAATATGCCGATCATGCAGTCAAAACTGCTAAAGACTACCGCAAAGTTGCTGACCAGTCCACTAAAAAAGCATCCCCCCCGAAAAGGTCGTTTAGTTTGGAAGACTTTTGGTTTCCAACAGAATGTAAAAAGAAAAAGAGAAATGAAGCAGGCATAAACAATAAAAGAATGAAAATGGGGGATGATGGGAAGACAGAAAAGAAGACAGAGGACAAAATAAAGATGAAGGAAAAAATGCTGGTGGAGGAAGAATTAAAGATTCAGGATGACATGAAGATGGAAAAGGAATTGAAGATGCAGGATGAAACGAAGATGACAGATGAATTTAAGATGCAGGGCGAAACAGATATGGAAGATGAGAGAAAAATGGAGGATGAGAGGAAAATGAAGGATGATCAGGGGAAGATGGATGCAAGAAAAATGGCTGCAGAAAAGAACATGGAGGGTGAAAGAAAGGTAAAGAGTGCAACGACGATGGATGATAAAAGGAAGATTGAGGTGAATAGGAAGATAGAAGAAGATGGAAAGGATGAATCGGATAGGACAAGGGAAAATCACGCTAATGCTATGGACAAACGTAAGGAATATGAACAAAAACGGACAAGGTCATTTCAGTGGAAGTGGCTTCAAGCCCATTCTTGGTTGCGTATAAACCTTGTAAGAAAAGGCACAATGCAGCCATTCATTACTAACACACCCTACCCAAATTCACAACCTGTTGGAACAGCAGTGAAATCAATGTACTGTGGTGTTTGCTCGAAGCACCCTTCTTTAGCATCAAAGGACAGTGAAATAGCTAAGAGAAGTGGGTCAAGCAACTTCAAAAACGAAACATTAAAAAAACATGAAACAAGCCAGAACCATAAAAAATGTATTGCTGCGGACAAAGCCATAAATGATCCGAAAAAAACTGAAATGTACAAGTGCTGTAAGCAGTTATACGAAAAAGAAGACGAAAAAATGGAGAAGAAATTTAAAACAGCCTTCTACATTTCAGCATTAGAACGGCCATTAGATGACTATGAAAGTCTCTGTGCGCTTCAAAAGTTAAATGGGGTGGAGCTGGGTGAAACTTACTTAACACGATCTGCATGTACTGAGTTCATTGAGCACATAAGCTCTGTTATGAAGGAGGATCTCGCAGACAAATTGAAGGAATGTAACTTTTTCTCCCTAATGATTGATGGAAGTACAGATCATGGTGTCATTGAGGAAGCCATTATGTATGTGCGCTACTTGGAAAAGTCAGTTGGAAGACCGGTCACTGCATATCTTGGAATCGAAGAACCTAAGGCTGGAACTGGAAGAGGTTATTTAGATGCGGTTGATTCCTGTTTCCAAAGAGTAACCAACATGAATTCAGTCACCTGGAAGGAGAAAATTACAGGCCTGGGAACTGATGGCTGTGCGGCAATGACAGGTGAGAAGAACAGAGTGGTTGGTTTATTGAGGCAAGAAAATAGAGAATTTATGGGATTCTGGTGCGGAGCACACAAGCTTGAATTGGCAGTTGTCAAGTGCCTAGAAAAATACCCAGATTTTGTGAAAGTACGTGATGTCCTTCGCAGTTTATACCAGGAATATCACTACAGCGCCAAGGCCCTCAGGGAATTAAGAGAGTTAGCTGAAGCACTAGATAACCAGATCTCTAAGCCTACTAATGTGTTTGGAGCTAGATGGTTGCCACATCTTCAAACCGCACTCCAGGTACTGTTTCGGGGATATAAAACTCTCATGATGCATTGCCAGAACACAAGAGAGATGCGTGTAGGATCAAGTGGTAGACAGGGGCGAGCATCATTTTCGGTCAAGTTCTTAACCTCATTCAGAGGGTTGCTCTTTACCAGTTTTCTGTGGGACATTGCGGAGGAAGCAGCTCATTTAAGTAAGGTTTTTCAAGCTGAGTTTCTTACAGTTACAACCGCAGCGGCAGCAGTTCGAAAATTTGAATTACAGTGTCTTAATATGAAGTCGTTAAATGGTCCAAGACTTGAGGCGTTTTTGAAAGAAGCAGGGGATGGCAGTGTGTTCAGAGAAATTGAGATCAAAAGGGAAGACAATGATATTGAACAATTTGAGAAGATCAGAAAGTCTGTTTTGGATGAAATTGGACAGAGCATGGGGGAGCGATTCCATTACCTCTTTAACGACCCAGTTGTAAAGGCTTCTTCAGTTTTAGATCCAGACACGTGGCCTACAGATCCTGAAGAGTTAGCGTCTTATGGTTGTGATCAGCTCTGTGTAATCGCTAACAGGTACCAAGAGCAGTTGCAAAAAGCTGGTTTTAAAGCTGAGTCTGTCAGTAGTGAGTGGCAGGGAGTTAAGAGCCTTGTGAGTCTAATGAAGCACAAGACAACACCTGACATTTACTCTGTGTTGTTTTCTAAACAAGAAGAATTTCCTAACTTCCTTTTGATTGCCGAGATTGTGTTCACCTGGCCTTTGTCCACCGCAGCTTGTGAGCGAGGTTTCAGCTCCATGAACCGCACTAAAACTATTCAGCGTTCAAGTCTTGCAACTAGGACACTGGACAACAACTTGCGTATCTCAGTTAAGTACCACAGCCTGAACAAATCAGAGAGAGTCAAGGCCTTCGCTCAATCTGGGCACCTTGCCAATGCAGTCAAGCATTGGCGAGAAAACAGTGTCAGAGCCCGACGAGAGAACTGGGTGGACAAACATCCAGAGGCTAGAACCTGGATCTATGCTCCTAACGCTTGTCTTTATTTGACTAAACTTTCTTCAGGTCGTCTGCCATTTTCAATCAGGGTTCTGCTGGAGTCTGCTGTTCGTAACTGTGATGGTTTTCAAGTGAAGTCTAAGGATGTGGAGAACATATTGGACTGGGAAAACAACCAGAAACTAAGTGTTGAAATCCCTTTCATGCCTGCAAGAGTTATTCTTCAGGATTTTACGGGTGTTCCTGCTGTGGTTGACTTTGCTGCTATGCGAGATGCGGTTAAACGACTTGGAGGAGAACCAGGCAAAATCAATCCACTGTGCCCTGTAGATCTTGTTATTGACCACTCAGTACAAGTTGATGTGTCAAGAAGCTCTACTGCACTTCAGAAGAATCAGGAAATGGAATTCATGAGAAACAAGGAGAGATTTCTTTTTCTGAAGTGGGGCTCTAAAGCTTTCAAGAACATGACTATTGTTCCACCTGGATCAGGCATTGTACACCAAGTAAATCTTGAGTACCTTGGTCGTGTTGTTTTTAACATGGACAAAGTTATGTATCCAGACAGTGTGGTAGGCACAGACTCACACACAACTATGATCAATGGACTTGGGATTGTTGGTTGGGGTGTTGGAGGCATTGAGGCTGAAGCAGTGATGTTAGGTCAGGCTGTCAGTATGGTGTTACCAAAAGTTGTTGGATATAAACTAACTGGGTGCGTCAAGCCATACATTACATCCACAGATGTTGTTCTGACCATTACAAAGCACCTTCGCCAAATTGGTGTTGTGGGTAAATTTGTGGAGTTTTTTGGACCTGGTGTAAGTCATCTGTCCATAGCTGATAGAGCCACCATTGCTAACATGTGTCCAGAGTATGGTGCAACCATTGGATTCTTCCCAGTTGACGAGAAGAGTTTAATGTACCTCAGGCAGACTGGTCGCAGTGAAGAAACACTTGAATGTGTTGAAGCTTACCTGAAAGCTACCAAAATGTTCCGTGATTACTCTGACCCAAACAATGACCCAGTGTTCTCAGAGATTGTGGAGCTGGATTTGGCCACTGTGACTCCTTCATTATCAGGACCCAAACGTCCTCACGACAGGGTAGCATTATCTGAGATGAAGCAGGATTTCATTGATTGTTTGAACAATAGAGTTGGATTTAAAGGTTTTGGCATCCCAGCTGAGAAACAGTCTGTGGAGGTTCCTTTTACTTTTGAAGGACAGGATTACAAGCTCTCGCATGGTTCTGTGGTGATAGCTGCCATCACAAGTTGTACAAACACTAGCAATCCATCAGTTATGCTTGGGGCTGGAATGTTGGCCAAGAAAGCAGTAGAACTTGGCTTGCAAGTCAAACCTTACATCAAGACAAGCTTGTCTCCTGGATCAGGTGTGGTTACATATTATCTCCGAGAGAGTGGCGTCATACCATGTCTGGAACAATTAGGATTTAATGTTGTGGGCTATGGTTGTATGACTTGCATTGGAAACTCAGGTCCATTATCTGAACCAGTTGCCGAGGCCATAGAAAAGGGTGACCTTATTGCAGTGGGCGTGTTATCAGGGAACAGAAATTTTGAAGGACGCATCCATCCTCTGACAAGAGCAAACTACCTTGCATCCCCTCCCTTAGTGATTGCATATGCCATTGCAGGCACAACATTGATAGACTTTGAGAAGGAACCCTTAGGTATTTCTAAGGATGGGAGGCCGGTTTTCCTCAGCGAGATTTGGCCAACAAGAGATGAACTCCAGGTTATTGAAAGGCAGTTTGTTATTCCTGCGATGTTCAAAGAAGTCTATGCTAAAGTGGCGACTGGTAATCCTCGCTGGAATTCACTTGAGGCACCAAACAGTTTGCTGTACCCCTGGGATGTCAAATCAACTTACATTAAACACCCACCTTTCTTTGAAACTATGGCCATAGAGCTGCCCACGCTTAACAGCATTCGAGATGCTGCTGTACTGTTGAACTTGGGAGACTCTGTAACCACTGACCACATATCTCCTGCAGGCAGCATTTCTCGCACCAGTCCTGCTGCACGTTACCTGGCTGAAAGAGGACTTGCACCGCGTGAATTCAACTCTTACGGATCCCGCCGTGGAAATGACGCTGTTATGGCGCGTGGCACCTTTGCTAACATCAGACTGGTGAACAAATTTATGGGAAAAGCTGGACCTAAAACCATCCATGTTCCCTCTGGGGATACGATGGATGTATTTGATGCAGCTGAGCGTTACCGACACGAAGGACGCCAGCTTATCATCCTTGCCGGCAAGGATTATGGGTCGGGATCGTCACGTGACTGGGCGGCTAAAGGACCTTGGATGCAGGGTGTCAAAGCTGTGATAACAGAGAGTTTTGAACGAATTCACCGCAGCAATCTGGTAGGAATGGGTATCATGCCCCTTGAATACCTTCCCGGCCAGAACGCAGAAAGCCTGGGACTCACCGGAAGAGAAAGTTACACCATTGAAATCCCGGAAGATATGAAAACTGGCCAGTTACTGGATGTCAAGTTAAATGATGGTCGTGTGTTTCAAGTAAAAGTTCGTTTTGACACCGACGTGGAACTGATGTACTTCAAACATGGCGGCATCCTGAACTACATGATCAGAAGCATGCTCTATTAA

Transcript

ANN06007-RA

Protein

ANN06007-RA

MEFSQQVADLKTLKEALISNNQDLCCKLRDKYSRKLNLNQSFPRSDKLKQDQLAQSLIPCDAPTGLIAHEVAGDGNCLYHAISLALVGTTEYSTCLRILTAIELFENTAYYGNHPRFREALQCGCPFGEVTVFTLALKENGIAEWEHSGNRESAIQSEAIGGCQLGEWSSLMHIMALSTVISRPVFTIYPSCAEAIRPLLHGLVKPRINRPDVFSNNDCFHILWSRDGGLDSRPNAIYVPNHFVPLFKKEYADHAVKTAKDYRKVADQSTKKASPPKRSFSLEDFWFPTECKKKKRNEAGINNKRMKMGDDGKTEKKTEDKIKMKEKMLVEEELKIQDDMKMEKELKMQDETKMTDEFKMQGETDMEDERKMEDERKMKDDQGKMDARKMAAEKNMEGERKVKSATTMDDKRKIEVNRKIEEDGKDESDRTRENHANAMDKRKEYEQKRTRSFQWKWLQAHSWLRINLVRKGTMQPFITNTPYPNSQPVGTAVKSMYCGVCSKHPSLASKDSEIAKRSGSSNFKNETLKKHETSQNHKKCIAADKAINDPKKTEMYKCCKQLYEKEDEKMEKKFKTAFYISALERPLDDYESLCALQKLNGVELGETYLTRSACTEFIEHISSVMKEDLADKLKECNFFSLMIDGSTDHGVIEEAIMYVRYLEKSVGRPVTAYLGIEEPKAGTGRGYLDAVDSCFQRVTNMNSVTWKEKITGLGTDGCAAMTGEKNRVVGLLRQENREFMGFWCGAHKLELAVVKCLEKYPDFVKVRDVLRSLYQEYHYSAKALRELRELAEALDNQISKPTNVFGARWLPHLQTALQVLFRGYKTLMMHCQNTREMRVGSSGRQGRASFSVKFLTSFRGLLFTSFLWDIAEEAAHLSKVFQAEFLTVTTAAAAVRKFELQCLNMKSLNGPRLEAFLKEAGDGSVFREIEIKREDNDIEQFEKIRKSVLDEIGQSMGERFHYLFNDPVVKASSVLDPDTWPTDPEELASYGCDQLCVIANRYQEQLQKAGFKAESVSSEWQGVKSLVSLMKHKTTPDIYSVLFSKQEEFPNFLLIAEIVFTWPLSTAACERGFSSMNRTKTIQRSSLATRTLDNNLRISVKYHSLNKSERVKAFAQSGHLANAVKHWRENSVRARRENWVDKHPEARTWIYAPNACLYLTKLSSGRLPFSIRVLLESAVRNCDGFQVKSKDVENILDWENNQKLSVEIPFMPARVILQDFTGVPAVVDFAAMRDAVKRLGGEPGKINPLCPVDLVIDHSVQVDVSRSSTALQKNQEMEFMRNKERFLFLKWGSKAFKNMTIVPPGSGIVHQVNLEYLGRVVFNMDKVMYPDSVVGTDSHTTMINGLGIVGWGVGGIEAEAVMLGQAVSMVLPKVVGYKLTGCVKPYITSTDVVLTITKHLRQIGVVGKFVEFFGPGVSHLSIADRATIANMCPEYGATIGFFPVDEKSLMYLRQTGRSEETLECVEAYLKATKMFRDYSDPNNDPVFSEIVELDLATVTPSLSGPKRPHDRVALSEMKQDFIDCLNNRVGFKGFGIPAEKQSVEVPFTFEGQDYKLSHGSVVIAAITSCTNTSNPSVMLGAGMLAKKAVELGLQVKPYIKTSLSPGSGVVTYYLRESGVIPCLEQLGFNVVGYGCMTCIGNSGPLSEPVAEAIEKGDLIAVGVLSGNRNFEGRIHPLTRANYLASPPLVIAYAIAGTTLIDFEKEPLGISKDGRPVFLSEIWPTRDELQVIERQFVIPAMFKEVYAKVATGNPRWNSLEAPNSLLYPWDVKSTYIKHPPFFETMAIELPTLNSIRDAAVLLNLGDSVTTDHISPAGSISRTSPAARYLAERGLAPREFNSYGSRRGNDAVMARGTFANIRLVNKFMGKAGPKTIHVPSGDTMDVFDAAERYRHEGRQLIILAGKDYGSGSSRDWAAKGPWMQGVKAVITESFERIHRSNLVGMGIMPLEYLPGQNAESLGLTGRESYTIEIPEDMKTGQLLDVKLNDGRVFQVKVRFDTDVELMYFKHGGILNYMIRSMLY

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P28271	Cytoplasmic aconitate hydratase OS=Mus musculus OX=10090 GN=Aco1 PE=1 SV=3
Q01059	Cytoplasmic aconitate hydratase OS=Oryctolagus cuniculus OX=9986 GN=ACO1 PE=1 SV=1
Q90875	Cytoplasmic aconitate hydratase OS=Gallus gallus OX=9031 GN=ACO1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002405 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05699 all species →	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF00330 all species →	Aconitase	Aconitase family (aconitate hydratase)	Family	Interproscan
PF00694 all species →	Aconitase_C	Aconitase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015928 all species →	Homologous_superfamily	Aconitase/3-isopropylmalate dehydratase, swivel	Interproscan
IPR001030 all species →	Domain	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036008 all species →	Homologous_superfamily	Aconitase, iron-sulfur domain	Interproscan
IPR006249 all species →	Family	Aconitase/Iron-responsive element-binding protein 2	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR044137 all species →	Domain	Aconitase A, swivel domain	Interproscan
IPR015931 all species →	Homologous_superfamily	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3	Interproscan
IPR008906 all species →	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR003323 all species →	Domain	OTU domain	Interproscan
IPR018136 all species →	Binding_site	Aconitase family, 4Fe-4S cluster binding site	Interproscan
IPR047273 all species →	Domain	Vertnin-like, ovarian tumor domain	Interproscan
IPR000573 all species →	Domain	Aconitase A/isopropylmalate dehydratase small subunit, swivel domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11670 all species →	ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003994 all species →	Molecular Function	aconitate hydratase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006101 all species →	Biological Process	citrate metabolic process	Interproscan
GO:0030350 all species →	Molecular Function	iron-responsive element binding	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN06007-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.