Gene detail

Detailed information of ANN06199-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:45474131...45475609
NR annotation: XP_020632602.1, uncharacterized protein LOC110069416 [Orbicella faveolata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000631 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02278 all species →	Lyase_8	Polysaccharide lyase family 8, super-sandwich domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014718 all species →	Homologous_superfamily	Glycoside hydrolase-type carbohydrate-binding	Interproscan
IPR039174 all species →	Family	Chondroitin sulfate ABC lyase	Interproscan
IPR003159 all species →	Domain	Polysaccharide lyase family 8, central domain	Interproscan
IPR011013 all species →	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37322 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0006027 all species →	Biological Process	glycosaminoglycan catabolic process	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0016829 all species →	Molecular Function	lyase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10345	SPSB3, SSB3; SPRY domain-containing SOCS box protein 3	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.