Gene detail

Detailed information of ANN06223-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:46130842...46159379
NR annotation: CAH3144384.1, unnamed protein product, partial [Pocillopora meandrina]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN06223-RA

ATGCATCGCAACTGCGATGTTGACGTGGCAAAATGTAAGGCCATTTTTCAGGAGCATCACGCCAAGGAAACGGCGAACGCAGTACAACGGTTAAACACACGTCGATTGCAATCGGTCAACACGAATGGCGTTATTTCCTTCCTTCGCCAAGTTTCCCAGTACACTCCAGATGCTTTCCCTATCGGCAACAATACCCGACTGGTGGCGCCATTTTGGGCTGATGTTGATACCCGTGTAGCGGGAGAAGTATTCTACCGGGAAACCTTCGAACCAGTCCTCCTCCAAAAGGCCACTGATGACATCAAAAACACTTATGTGGATCACAGAAAATTCAAAGCCAGGTGGCTATTAATTGTCACGTGGTACGAAGTGGCTTTCCTTGGCAGTAAAGTAAATAAGAGAAACACTTTCCAAGCAGTCCTGATTACAAACGGAAAACATTCTTTTGTGATTTTTAATTATAACAAAGTCACATGGTCCACTGGACTGGCGAGTGGTGGAAATAGCTTTGGACTCGGAGGTACCCCCGCACAGGCAGGCTTCAATGCTGGTGATGGTGTACGATATTTCAATATCCCAGGATCTCGTACCCATAAGGTGTTGGACCTTCCTTACAAGTCCAATGTAGCGATTCCAGGCCGATGGATGTTCCGTATTGACAATGCAAAGATCGATGCTGGCGGCTGCAATGCGAAAGGATCGCTTGTCGTTTCTCCACAGTCGGGAAATATGCTTGGTGGTGATAACGTTTTAATTTCTGGACCTTGCTACAAACCATCGCAACGCATCGTTTGTGAATTTCCAGGCGGGCAATTAAGCAATGGAAGTTATATGAGTGACATGCAGGCATTTTGTACCGTGCCCATGCTAAACGTGACTGGCAGGTTGTCAATCAAACTGTCAATCAATGGAGGAAAGAGCTTCGACTTTCAAGGAACTTTTACATCAGTTAACATCAACAGGTTCAAACCCCGCGTTACTCGTCTGGCCGCAGAAACCTGGATCGAGCAACACGCTGTCAGGATCACATGGGACCTAGTCCACCTCGGACCAGAGAATCAGACGGTTGATATTCAGTTGGCACGCTTTTCTATAAAGGATGATGGTCACGTGTTTTTTCACAGCATGTACACTATATTAACAGATCATCTGAACACTGGAAACGCTTCGTTTATTGTGCCAAAAGGAGAAGGACAAGGAGCTTCTTTTGGAAGCGGGCGTTTTAGTACACTGGTGGCAGTGAAAAGGACTGGAGACAAGGGCGGGCATTCTCCAGCCGAGTGGATCTGGAGCGACCTGTTTTACTGGTTAAGTTACGAAATGGCTCATGAGCGATGTATGTACTGGTACAAGAGGCAGCCGAATCCCTCAATATACACAGATGACGCTTCTGTTCTGTCCTGTCCACAAACGCTTGCTCAGGCCTTGGCAGACACTGGTCGGTTTATAGCTGAAGAATACGTCAATCCCCATTCCGGGCTTTACTGTGGCATTCATCAGCCTGCTGCAACACACTGCTTCAGGGCTAGCACTCCAAGTTGTGGGAAGTATTTTGAAAAACGGCCTTCAGACGACGGTTCCAATTACGACCCTCCAAGACCAGCCATTACTTTTGGTGATCCACACATCATTACGCTTGATGGCGTGGAGTACACTTTTAATGGTTATGGGGAGTACGACATTCTCCAAGTAGCTGGCCCTGAATTTAAACTCCAGGGACGAATGGAGCCATTGATTGATGAACATGGCAGGACTACTAGGGCAACAGTCTACAGGGCGTTTGCACTGAAGGAAAATGGCTCCGATATTTTGCAGGTCCACATCAGTGGTCGTAACGATATTGAACTCTTGGTGAATGGAGATGTCACTGAATTCGATGAGCAGTTAGTGATGGATTTCAATGGCGTCATTGTTTTCAAATGCAGCAGTGCGTCTAAATACTCCATCACTTTCAACTCTGGGATATTAGTTAGAATTGAGAAAGCGGATGAGGAAATTTTGGAAATGATGTTACTGGTGCCACCGAGGTTTAAAGGAAACACAAGCGGTCTGCTAGGATTCTGGGATGGAGACAAGGAGCAGGAATTTCTTCTTCCCAATGGAAGCTTCCTTGAAACAAACTCAAGCCAGTCTAAAATCCATTATGAGTTTGCTCAGCTATGTAAGCAAGGGCTACCATCAAAACCACCAAACCAACCAAACTCGATATTCACTTACGACGAAGGGAAGAACCACGCGTCATATTTCGATGACGGTTACGTGCCCACATTTTTGGATCAAGAAGACTTGGTGTTTGATAACGCCACCCTGGGGAAGTTGGCACGTGCTGAATGTGGTGATAACAAACAGTGTCTGTTCGATATCCACACCACTGGTAAGGTTAGCATTGGAAAAGCCTCGAAAGAGTCCGGGGAGTCGTTTGTTGCGGTCATCAATGAAACAGAGACTCCAGGTTGCATTCCAATAAAAGAAACCCTTCTTGACGGAGAAGTGTTTAGGAACGACACTAAAGATGGCCGAATGATCTTCAAGTTCCAGTGTCACTTAGGATTCCAAATAAAAGGTTTTACGGTCATTTCTTGTTTTAAAGGACAATGGAATGGCTCTAAACCAAGATGCGAACAGAGAACTTCTGATAAGCTTTTTAAGCTGGAGGAAGTTCTTGATAATGCGATCGAGTTAAAGGACAGTCACATGATCCCATTCATCGGATCGCTTGTCGTTTCTCCAAAGTCGGGAAATATGCTTGGTGGCGATAACATTTTAATATCTGGGCCTGGCTACAAACCATCGCAACGCATCGTTTGTGAATTTCCAGGCGGGCAACTAAGCAATGGAAGTTATATGAGTGACATGCAGGCATCTTGTACCGTGCCCATGCTTAACGTGACTGGCAGATTGTCAATCAAACTGTCACTCAATGGAGGAAAGACCTTCGACTTTCAAGGAACGTTTACATCAGGTTCAAACCCCGCGTTACTCGCCTGGCCACAGAAACCTGGATCGAGCAACAAGCTGTCAGGATCACATGAGACCCAGTCCAGCTCGGAAAATCAGACGGTTGATATTCAGTTGGCACGCTTTTCTATGAAGGATGATGGTCACGTGTTTTTTCATAGCATGTACAATATATTAACAGATCATCTGAACACTGGAAACGCTTCGTTTATTGTGCCAAAAGGAGAAGGACAAGGAGCTCCTTTTGGAAGCGGGCGTTTTAGTACACTGGTGGCAGTGAAAAGGACTAGGGACAAGCTCGGGCATGCTCCAGCCGAGTGGATCTGGAGCGACCTGTTTTACTGGTTAAGTTACGAAATGGCTCATGAGCGATGTATGTACTGGTATAAGAGGCAGCCGAATCCTAAAATATACACAGATGACGCTTCTCTTCTGCCCTGTCCACAAACGCTCGCTCAGTCTTCGGCAGACAGTGGCCGGTTCATGGCGGACGAGTACGTCAATCCAGATTCCTGGATTTACTGTGGCAATCATCAGTCTGCTACTTCACACTGCTTCAGGACTAGCACTCCAAGTAACCAAGGTGCAGGCCAGCAGTGCTGTTATAATGAACAAGGAAACTTATTGGTTGGTCCACCAAACGGAGGATCCCTGGACCGAGTCCATGTTGAAGTGGGAGTACCAGTCTTCTCTCATTTCTTTCACGACCTTGTTCCTCATTGGGATTGCTGTCTGCTGTCTGCCAGTTGTGGAAAGTATTTTGAAAAACGACCTTCAGACGACGGCTCCAATTACGAACCTCCAAGACCAGCCATTACTTTTGGTGATCCACACATCGTTACGCTTGATGGCGTGGAGTACACTTTTAATGGTTATGGAGAGTACGACATTCTCCAAGTAGCTGGCCCTGAATTTAAACTCCAGGGACGAATGCAACCATTGGTTGATGAACATGGCAAGACTACTCGGGCAACAGTCTACAGGGCGTTTGCACTGAAGGAAAATAGCTCCGATATTTTGCAGGTCCAAATCAGCGGTCGTAACGATATTGAACTCTTGGTGAATGGAGATGTCACTGAATTCGATGAGCAGTTAGTGATGGATTTCAATGGCGTCATTGTTTTCAAATGCAGTAGTGCGTCTAAATACTCCATCGCTTTCAACTCTGGGATTTTAGTTAGAATTGAAAAAGCGGATGAGGAGATTTTACAAATGATGTTACTGGTGCCACCGAGGTTTAAAGGAAACACAAGCGGCCTGCTAGGATTCTGGGATGGAGACAAGGAGCAGGAATTTTTTCTTCCCAATGGAAGCTTCCTTGACACAAACTCAAGCCAGTCTAAAATCCATTATGAGTTTGCTCAGCGATGGTCTACCACCGCCAATAACTCGATATTCACTTACGACGAAGGGAAGAGCCACGCATCATATTTCGATGTCGGTTACGTGCCCACATTTTTGGATCAAGAAGACTTGGTGTTTGATAACGCCACCCTGGGGAAGCTGGCACATGCTGTGTGTGATGATAACAAACAGTGTCTGTTTGATATCCACACCACTGGTAAGGTTAGCATTGGAAAAGCATCAAAGCAGGCCGTGGAGTCGTTTGCTGCGGTCATCAATGAGACAGAGACTCCAGGTTGCATTCCAATGAAAGAAACCCTTGGTGACGGAAAAGTGCTTAGGTACGACGCAAAAGATGGCCGAATGATATTCAGGTTCCATTGTAACTCAGGATTCCGAATAAACGGTTCTACGGTCATTTCATGTTTTAAAGGACAATGGAATGGCTCTAAACCAAGATGCCAACAGAGAGTTTGTCCTCCAACTGTATCGCTTGAAAATGGTCATGCGCATGGTAATGGTACAAGTGTCGGCTCACGCTATTGGCTCACCTGTAATAAAGGCTTCTCTCTGATTGGCCCAGACAATATTCATTGTGGCAAGGACGGCCAATGGAATGGATCTTTACCAAAATGTGCCAAAGATTTGCCAGCCGGTGGGACACCATGGTATGTTTACACCTCTCTATCAGGAGGAGTGCTAGTTCTTGCAGCAGCCTTGTTTTCGGTCACCTGTTTCTTTGCAACACTGAGTCGTCGCAAAAGGAAGAACCGTGCTGCTATCATCAATAAGACAAGAGCAAAGACTAAGGACGCTTTCGCCTTTGACAACCCGGAATACTGTTCAAGTACATCATCCTTGGAACTTAAGTTCTTTAAGTAA

Transcript

ANN06223-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UGT4	Sushi domain-containing protein 2 OS=Homo sapiens OX=9606 GN=SUSD2 PE=1 SV=1
Q8TER0	Sushi, nidogen and EGF-like domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SNED1 PE=1 SV=2
Q70E20	Sushi, nidogen and EGF-like domain-containing protein 1 OS=Mus musculus OX=10090 GN=Sned1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000637 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF03782 all species →	AMOP	AMOP domain	Domain	Interproscan
PF06119 all species →	NIDO	Nidogen-like	Family	Interproscan
PF00094 all species →	VWD	von Willebrand factor type D domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003886 all species →	Domain	NIDO domain	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR005533 all species →	Domain	AMOP domain	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR001846 all species →	Domain	von Willebrand factor, type D domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR051495 all species →	Family	Epithelial Barrier and Cell Signaling Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13802 all species →	MUCIN 4-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007160 all species →	Biological Process	cell-matrix adhesion	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23820	SUSD2; sushi domain-containing protein 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.