Gene detail

Detailed information of ANN06290-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:47587832...47588845
NR annotation: XP_020616159.1, vacuolar protein sorting-associated protein 72 homolog [Orbicella faveolata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R5V9	Vacuolar protein sorting-associated protein 72 homolog OS=Pongo abelii OX=9601 GN=VPS72 PE=2 SV=1
Q15906	Vacuolar protein sorting-associated protein 72 homolog OS=Homo sapiens OX=9606 GN=VPS72 PE=1 SV=1
Q5E9F6	Vacuolar protein sorting-associated protein 72 homolog OS=Bos taurus OX=9913 GN=VPS72 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008603 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05764 all species →	YL1	YL1 nuclear protein	Family	Interproscan
PF08265 all species →	YL1_C	YL1 nuclear protein C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013272 all species →	Domain	Vps72/YL1, C-terminal	Interproscan
IPR008895 all species →	Family	Vps72/YL1 family	Interproscan
IPR046757 all species →	Domain	Vps72/YL1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13275 all species →	YL-1 PROTEIN TRANSCRIPTION FACTOR-LIKE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0043486 all species →	Biological Process	obsolete histone exchange	Interproscan
GO:0045815 all species →	Biological Process	transcription initiation-coupled chromatin remodeling	Interproscan
GO:0140849 all species →	Molecular Function	ATP-dependent H2AZ histone chaperone activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11664	VPS72, TCFL1, YL1; vacuolar protein sorting-associated protein 72	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.