Genomic Location: Scaffold_5__1_contigs__length_58733080:49185893...49196664
NR annotation: XP_029200708.2, tumor susceptibility gene 101 protein-like [Acropora millepora]
Species Leptoseris scabra · all data for this species · gene families
| CDS |
| ANN06379-RA |
| Transcript |
| ANN06379-RA |
| Protein |
| ANN06379-RA |
| UniProt accession | Description |
|---|---|
| Q99816 | Tumor susceptibility gene 101 protein OS=Homo sapiens OX=9606 GN=TSG101 PE=1 SV=2 |
| Q6IRE4 | Tumor susceptibility gene 101 protein OS=Rattus norvegicus OX=10116 GN=Tsg101 PE=1 SV=1 |
| Q61187 | Tumor susceptibility gene 101 protein OS=Mus musculus OX=10090 GN=Tsg101 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002227 (this species only) · gene tree & orthology |
| Ubiquitin family | UBD|UBC-like|UEV · all ubiquitin genes in this species |
| Ubiquitin family | E2|UEV|UEV · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF09454 all species → | Vps23_core | Vps23 core domain | Domain | Interproscan |
| PF05743 all species → | UEV | UEV domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016135 all species → | Homologous_superfamily | Ubiquitin-conjugating enzyme/RWD-like | Interproscan |
| IPR017916 all species → | Domain | Steadiness box (SB) domain | Interproscan |
| IPR008883 all species → | Domain | Ubiquitin E2 variant, N-terminal | Interproscan |
| IPR052070 all species → | Family | ESCRT-I complex UEV domain-containing protein | Interproscan |
| IPR037202 all species → | Homologous_superfamily | ESCRT assembly domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23306 all species → | TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0015031 all species → | Biological Process | protein transport | Interproscan |
| GO:0036211 all species → | Biological Process | protein modification process | Interproscan |
| GO:0000813 all species → | Cellular Component | ESCRT I complex | Interproscan |
| GO:0008333 all species → | Biological Process | endosome to lysosome transport | Interproscan |
| GO:0043130 all species → | Molecular Function | ubiquitin binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12183 | TSG101, STP22, VPS23; ESCRT-I complex subunit TSG101 | - | Exosome | ko04147 | deepkoala |
Genes whose expression across the transcriptome samples of Leptoseris scabra tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Leptoseris scabra, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
