Gene detail

Detailed information of ANN06625-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:53215015...53224217
NR annotation: CAH3147576.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P49813	Tropomodulin-1 OS=Mus musculus OX=10090 GN=Tmod1 PE=1 SV=2
P70567	Tropomodulin-1 OS=Rattus norvegicus OX=10116 GN=Tmod1 PE=1 SV=1
A0JNC0	Tropomodulin-1 OS=Bos taurus OX=9913 GN=TMOD1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF03250	Tropomodulin	Tropomodulin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004934	Family	Tropomodulin	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10901	TROPOMODULIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005523	Molecular Function	tropomyosin binding	Interproscan
GO:0005856	Cellular Component	cytoskeleton	Interproscan
GO:0007015	Biological Process	actin filament organization	Interproscan
GO:0051694	Biological Process	pointed-end actin filament capping	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10370	TMOD; tropomodulin	-	Cytoskeleton proteins	ko04812	deepkoala