Gene detail

Detailed information of ANN06718-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:54887907...54902042
NR annotation: XP_020615517.1, uncharacterized protein LOC110053606 [Orbicella faveolata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN06718-RA

ATGTCACAAACTGAATTTTATCCGATTCTCTGTGACATAATAAGGAGCTTTACTTATCACAAGATTTTACAGCGCCATTTTAACTCCGTAATTCAGACGTTTGTTCACGGAGAAGCCATTTACCCGCGAGAATTTGCTTCAGTAGCAATCAAGTTTCTTGGTGACGAAGTAACCTCAGAATTTAATCGCAAATTCAAAACAGTTCTCAGTACCGCTGCAGCTGATCATGTAATTCAAAAGCATGCCGAATTATTTTCCGATGAAGGCTATGAAAAGAGTTTCCGTGTATCACTTGATAGGCTTCCATCATTGGTTGCTGAAATGGGAGACATCATCTTCAAAGAAAAGCACAACATTGGCACAGTCGGTGCATTCTTAGCCTTTGGAGCTACGTTTGCTGCATATTGTGAGCAAAAGGATGGCTTGGGCTTGCAAGCAGTGGAGACAATAGTGAAATCAGTAGCTAAACATTTAGATGACAATCTTAGATCTTGGTTGAAAACAAACGGAGGTCTGGGTATGGTTGAGTCTGCTAAAGTTGACTGTCTTAATCATGTCACTGCTTCCAAAGAGAGAAAAATCCAGTTTACAGATTCATTGAAACTTGTCTTAGAACATCGCAAACAAAATACAAATCCGCAATTCTACAAAGAAATGTGCAAACTTGTTTTAGAACTGCAAAATCTTCTTGGAATGAAGGAGAAGACATTTGAAACCTTTTTTGATTATGGCATGTTCCTTTTTGCCCAAGGAAACTATTCTGGAGCTAGGGATGCCTTGGAAAATGCTCTTAAGGGATTTAGCACAAGCAAACCTTCCCTTACAGGCCAGTTCCACTTTCAGATGGGTGTCGTGCACTGTCACATGGAAAGCTATCAAGAAGCTTTGACGTCATTTCAAGAAGCTCTGGAATGCAACCAGATTATGGTTGGAAAGGGAAACATGTCAACTGCTATTTGCTACCACTGGCTGGGATATGTGTACCGCAGACAACAGAATATGGATAAAGCCTTTGAAACACAGAGCAGAGCACTGAAGGAGATGGAAGAAAACAAAGGGGACATTACAACGGGAAGCTTTATTAGTGACTCATGCTTCGAGTTAGGATGCATTTATCATGAGAAAGGACACTTGAAAAATGCTGTTGAGTTCCATCAAAGATCTTTATTGATACGTGAGGAGCGAGGTGCTGGTTTTAAACGTAAGCTTCAGTCATATCTCTATCTTGCCAAGGTCTTAATGAGTGAGCGACTCAAAAGGCCTTGTGCATCTAATGAGTATGCCAAAAAAACATCTGAAATTGTTTCTTTGCTTGGCAAGGCTTTGACACTGTGTAAAGAACAATCCCAGCGTGGAAACTTACGTGAGAGATTTCCAGTTATCATGACTGCACACACATACCGACTAGCAAGCATTAGAGACCTTCTGTTGTTAGCACTGGAACTTTGTGCAAATCTTATCTCCAACGTAGCAGAAGAGAACAAAGAAGACCCACAGAAAAATGAGAATCTTATCACAGAATTCAAGAAATTGATGAGGACAGTTTTGGATGAAAGTGAACTGCGAGAAACATCATGTGGAGAGAGCAGGGATGAGGTCCTACATTTGGCTGATGATCAAGAACGTGAACAAGTGGCTCCTCCAGAGATTAATTTACGTGGCCGTTTGGCCTTGGAAGCCTACAACAAAGCCCTTAATGAAGGAAAGACTTGTGTGAAGAGGGTTCCTGTTATGTTGATTGGACAGGATCGCTCTGGAAAAACCAGCCTGAAGAAATCACTGAGGGGGAATCCTTTCAACCCAGACGAAGACAGCACTGTGGGGGTAGATGTTGATCCCTCGTACTTCCAAGTAACCACTGAGGTCTGGAAGGCGGGAGAGAAGGATCAAGTGTCAAATTCTGAAGACACAATTTCTTATGAGCTTCATGCGGCTCGATTGGTCGTCGAACATTTGAAGGAGGACAAATGCATTCTCGAGGAAAAGGCCGCCAAGTCTGTGCAGTCTGGAAACATTCCCCTGGTTGACACAGTCGCTCCAAGTGTCAATGTTAGCAGTGAGTTTAATGAGGCGTCTTCAGACGAGTCTAGTGCAAGTAGTCATGTCTTAGTTGAATTTCCTTCAGATGTCAGAGAAGCTGTGCTAAATGAGACGCCAGGAAATGCCACAGAATCTGTTCAGTTGTCCAGAGTTCCAGATTCCGATGATGGCAGTGACACCGTTGCTCATCCTACACAGAAGAACGAAAGCGTTCATCCTCTCGCCTCAGCAAAGATACCAGATGAGATAGAAACCCTGATTAAAAAGTTACTCCAGGAAGTCGACCATGTGAAAGAAGAAGATATTTATTCCATTCTGTGGGATTTTGGCGGACAGTCGGTGTACTATGTAACGCATCCGCTATTTCTTACCTCAAGAGCAATGTATTTGTTGGTTCATGACCTCAGCCGAGATCCTCACGAAAGAGCCAAACCTGTTATGAAGCAGGGGATATTCAAGCAAATTGAAGACAGCTTTGACACGAAAACCAACCTAGAGTATCTAGATTTTTGGATGAGTTCCATTGCTGCTCTAGCGAATCAAGATGCGAACCACCCTGTGCATTCAAGACCAAAATCTAAGGTGCTTCCAGAGAAACTTCCTCCTGTGTTCCTAGTCTGTACTCATGCTGATAAACCTTTTGATGGGGTGGATCCTTTTGTACTAGCTCGTGAGGTTTATGGTTCTTTACAGACCAAAGCGTGCAAAGCGCAGTTGTACGGTGGTGTGTTTGTGGTGGATAACACTAAGTCAGGCCTTGAATCGGAGTGTTCGGAAGTTACACGCCTCCGAGAAACAGTACTTGCTGTTGCTAAGGAGCTACCGCAGATGAAAGAGGTCATTCCAGTCAAGTGGATGAAATATGAGAAGGCGCTCCAAATCACCCGGAAGGAGGGTCATAAGTGGATTTCTGTTGAACGAGCAAGGCAAATCGCATCTGAAGTGTGCAAAATTGATGACGACCAAGAGTTTGTGACATTGCTTAACTTGTTGCATGATCAGAGAATTTTGATACATTTTGATGACACACCTGAATTCAAGAACTTGGTTGTCTTGGACCCTCAGTGGTTGATTGATGTGTTCAAGAAAGTAATTACAGTGAAGCCTTATGACTACCAAGACAAAGAGTTCACAGAACTGTGGCATAAACTTGAGACAACAGGAATCCTGGAAGAAACGCTATTGCGGCATGTTTGGGGTCCTTTGTTAGACCAGCAAGAAACCTCTGAAAGCCTCATTGCAATCATGGAGAAATTCAGCTTGCTATGTCCTTGGCCTTCATCAGATGCGTCATGCAGCAAGCAGTACCTGGTGCCGTCCATGTTGATGTCGCATCCACCGCAAGACATCATCAAGTTGGTTACCTCAGCACAAATTCCTTCTCTTTTCGTTAAGTTTGAATCTGGGCAAGTTCCTCCAGGCTTGTTTCCTCGATTCATCTTGCAGTTCTTTCAATGGTGCAGAGATGAATTTTGGAGCTCAGATGACCCTCAGTTGTATCAAAATTTTGCCAGGTTTTACACCTCTGGAGACGACGACTGCTCAGTTGTTCTTTTTTGTCATTCCTCGTCCATTGAGGTTGTTGTTCACAGAGGAAATCTCAGTCCTGAATTAGCGGAAGGTCTGAACACCTCTGCCGCTGCGTTTGAAGTGTCCTGTACTCGAGCTGTGTATAGACAGCTGAGTTTAATGCTTGAATGCATGCGCAAGGAGTTCTGTTGGTTGAGGAATATGAGGTATGAACTGTGCGTCATCTGCCCGGTCTGCTGCCAAAGAGGAGTAGTGAACTATTGCCGCACCCACCACAAACAGAGTTGTCAGAGAGACGAGTGCCTGCACTTCTGGTCCGAGTCTGAGTTGCGCAGTGCCAATCATTTCATTATTTGCACACGGTCAGCTACTGCATTGAAAAACAAAGTTCATGTCAACCAGTTTGCAGCTTGGTTTGCATCCCCGGATGAACTGATTGCGAAGGATGAACAAGATGGAAGACTTTTGCCTTCTGGTGAAGCAAATGAAGACAAATCCTTGAGTCTGCCCGGCAAGGTGTTGGAGTCGCTGTTGTCGCCGTCATGTGATCCAAAGGAAGTCGTTCGTCACCTGGAACAGAGTCTGCCGTTGAACCAAGCCTCCTTGGAGCATCCGGAGCCTGGGACAAAGAGATTGATCCATTGCCTGGCAATGAAGGCAAAGCATTCAAACAGGCTTGATGTGGTCAAACACTTGAGGGAAATTACACCAGCTGGGACTACTGGTCCTTTGCTTCCTGGGAACCTAGATATTCGGAATATTCCTGTTCGCCAGATGAGAGAACTTACAATTGACTTGAGCAGCGGAGAAGAGTGGAAGTTTGTCGCTGAGAGACTGGGTCTGACCCCAAAAGAGATACGTTACCTTGACAAGCGGACTTTGAACCCAAGTTGCGCTGCATTGGCTTTCATTAGTCAGCGGTGCTACATTAATGTGGACGATTTGTATGATGTGCTGAACGACTGTCAGCTACCTGTGATGGCCGACCTTCTGTGA

Transcript

ANN06718-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5S006	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Mus musculus OX=10090 GN=Lrrk2 PE=1 SV=2
Q5S007	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens OX=9606 GN=LRRK2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000151 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17874 all species →	TPR_MalT	MalT-like TPR region	Repeat	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001368 all species →	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR002475 all species →	Family	Bcl2-like	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036834 all species →	Homologous_superfamily	Bcl-2-like superfamily	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47679 all species →	PROTEIN TORNADO 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN06718-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.