Gene detail

Detailed information of ANN06765-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:56051908...56074832
NR annotation: XP_015758951.1, PREDICTED: uncharacterized protein LOC107338231 isoform X1 [Acropora digitifera]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN06765-RA

ATGTCGAGCAAGATAAGTAACTGCAACGATTTTGATCAAATTGATAAAAACAGCAGACGATACACTGTGCAAAGAAATGAGTCAACGATTTCAAACGTGACTAGCAAAGCTGAAAACAGCAATTGTTATGCAGTGTTCCTGTGTATCGTCAAATGGCTCGTGGCCCTCTGCCTTTGTTCAGTGGTTTTGTTATGTGTCGTAGGCAGCAAATTAAGTTTACTGGTTCTTGGACAACACTTTAGAAACATTAACCGTAATGGAAATAGCACTACAGATAAACCGGTATTTGCTGAGACAAACAAACAAGCTTTGTTCATTATGCTGCTTTTTTCTCTGATGATCCCACAAGCAGCTTCTCTCATTTACGCTGCATGGACGAGTTTGAGGAGAAAAAGCAGACCATGGCCAACAAAGAAGGCATTGATAATGATTTCTCTTGGTGGGCTCCTAGAGACCATTTCTATGTGTTATATCACCATGGTAATGCTGACAGTTGTGCCAATCACCCCAGACGCCATCATACTGCTCATGTGCAGTTTACCGATGGTATCCGCGATGTGCCATGCAATCAAATCAAGATCAAGGTGGAAGACAGTGGCTGGAAAGTTGGATATCATCAAGCTTGGAAGTTCAGCTGCTCTTGCTGTGATCGGCATTGCACTGTTACTTTATAAGATGCATGACACATCTACACAGATCGGCATTGTAATTGTGTTGATTTTTGTTTCTATCGCTTGGTCACCAAAGATGCGGAAACTTCAAATTCAAAGCGAGACAGAAGCTGCTAACCTAAACGGGTATGGTGTTATCAGAGATATGGAACAAGGTGCTGTCCAAGACTATCCTCAGAAAGAGAGAACTGCGCGTGGCAAAGCTGCAATTGTTTCATCTCTTTGGAACCTTCTTCTCACACCGTTCATTGCTATTCTGTTCGCTAAAGTTTATCATATCGCTCAGCTGGACAACATTACTAGTGGATTGAAAGCAATTAATTCAAACAATCCATCTTTTGTGTACTTCATAGTTCATGTGCTCACCAGCTTCTTTGGATACCATTTTGGATGGCTAGCCTGCTCCCTTTGTATGCAGCAGATTGGGTACGCTCTACCCTTGACGCTAGCTACACCAGTCGTAGTTTTGATGTCACATGTGTCATGCATTTGCGAGAGAAACACAATTTCCCTGCCTTGTGGATCAGAAAACCTTGTTTACATTCTTCCTGTGGGTGCACTTCTCTGCCTAGCGCAATTCTTTATGACTACGTACAACGTATGGAAAAGTCAAGGAGTAATAATGGCCAAAGCACTCGACCTTTTTTGGATTCCATCTTATAATGGTGTCTGCCTTGAACAGTACCTGCTATTGAACAAGCACAACCAAGCTTCTGATAAAGAACACGCCACACAGCAAGATGTGTCACGTGACCTCAACATATTCATCTGCACCACTATGTATCATGAGGAAGATTATGAAATGAAACAACTCCTTCAATCCATTCACGACGTCGATACACACAGCAAGAAATCTGGACGCCATTATGAGTCACACATCTTTTTTGACGGATGTGTGAGAGCTGAAGTACTCAACAGTTTTGTTCTGCAGTTGGCTTCATTGGTGGAAAAGGCTCTAAAAGTGAAGCTTAGTGACTGTACCAAAATGAAGACCCCGTATGGAATGCAGCTAAAGTGGAAACTCCAAGGTGGAATGGACTTCATAATTCACCTGAAAGACAATACTAAGGTGAAGAACAAAAAGCGTTGGAGCCAGGTGATGTACATGTCGTATGTCTTGGATTATAAACAAGCGCTTCTTGAAGTGGAAGACGACCAGTCCTTTATCCTGGTAACAGATGCTGATGTCAAATTTACCCACGGATCCATTGAGACGTTGATAGATCAGATTGTTGATGATCCCCAAACAGCTGCAGTGTGTGCTCGGACCTACCCCTTGGGGAAAGGGCCTGCCATTTGGTATCAAGTCTTTGATTATGCCATTGAACATTGGTTTCTAAGGGTAGCAAATCACATGTTTGGTTCCGTATTGGTCAGTCCGGGATGTTTTAGTCTGTACAGATGCCAGGCTGTGAGAGAAGTGCTACCAACTTACGCTACAAGAGTGAATCATGCATTTGAATTCCTTTACAAAGACATGGGGGAAGACAGATGGATCTGCACTCTGATGATACAGCGAGGCTGGCGAATAATGTATTGCGCTGCTACAGGTTACGGTAATTACTGCCCAGAAAGTCTCGAGGAATTTTACAAACAAAGACGACGATGGTCGCTATCCACATTAGCCAACCTCGTTCTTCTTATCAGAGAATGGAAAATGATATGGAAGAAAAACGAACACGTCTCCTTCTTTTTCATCCTGTATCAAATTTTCCTTCTTTGCTCTGATGTTTTTAGACCTTCAGGAGTCATTTTGTTCATAGTTGGTGGAATGGCTTTCTCGGGCATCGATTCGAATGGAAAAACCACGCTTGTTCTCCTCTCTCTTACGGTTTTTGTCTATACATTGGTTTGCCTCTTCACTTCACAACATTTCCAGTTCAAGGTGTCCAAAATACTGACGTTTGTTTTTGCTGTAATCATATGCATTGTTGTGATTGGTGTAGGTCTACAAGTTTCAAGGAATTTAAAGGAAAGAGGCGCTAAACTGACATCAATACTAAACACAACCGTTACTCCTGAGCCTAAAAGTTTACAACATCATCTACCGGCTATTTACGCGGCTGGATTACCTGGTATTTTTGTTGTTGCTGCACTGCTGCATCCGACGGAGTTCACCTGTCTTTTACAAGGAGTTTGGTATCTTCTGTGTCTTCCGTCTAGTGGTCTACTCCTAACAATTTATTCTCTTTGCAATATAACGGACAGGTCTTGGGGGACAAGGGAAGGAAAATCTGTCTCAGAAGGTGACGACTGGTACAAGTACTTTGGGAAATGTCTGAAGAAACTTTGCGCCTGCTGTGGAAAACAGGAAGAATCAGGACAGTTGAAGTATGCTAGTAACCAGGAAGCTACAAAAGAGGACAGGATTAACGGCCACTCAGACAACACAACGAACGAAGACACTATACCCTCCAGTGCACAAGGAAACCGAGTCATCACTATGGAGGATAAAGAAGCCTTAAAATTTAAAACTGAAAAACGGCTGGATGGAAACTTGAAGAAGAAAATATCAGAAGGCGTATGCAAAACCAATTTTTTAATTTCACCTTCTGGAGGATCAACGCACGTTCAAGCTCACGTTGATATAAATCTAAATAATGACAGACCTACCTTAGCAGTATATTCTCCAAATGAAATGCCGAGAAAGAATCAAGGTAGTTCTTTCCTAATGGTGAAGTCGAAAGAAGCTGCAGAATCCAGTCCTAGAGTTGAAAGCGGAGTACGCTCAAATAATGCTGCATTTGGAGTATTGCCTGAGCAGTCAGTGCAAACTGAGGCAATTTCAAAAGGACTCCACATGTCAGTGAAAGAGGGTACGGCAGAGGATCAAGATGCATCGTTTTCTCGTTCTAACGAGAGTCGTCCTCTCGAAAATATTGCCGACTCTTCAACTAGCAACGGCATATTGTCTGGACATGAAACAACAAATTTATGCAGCTCAACGCACAATCCATGTAATGAGTCCCAAAATAACTTTCCACTTCAACCAGATTCCGGAAGGAAAGACTTGTCATGTCCTAGTGATATCAGCATATGCAGCCCCTCTTCAATTAGTCCACATGATTTCGCAATTCAGTTTGTCATGAGCAAGGGGCACCAAGAAGACCAAGGACCAAGCTTTCCATACACAGCATTAAGCACATCGTCGACAGCAATAATTGCAGATGCAGCTCAACAACAAAGAAGTGAAATCCACACGATGATAAATTCTGAACTATCATTCAAGTTTGGCTCGAGCCTACAAAGTCTACGCTTAGATGAAAACGGGCAATCCCTGTCAGCACTCAAACAAGAAGCTTTTTATTCGGATCTAAACTTACCAGTGGAAAAATGGCTGACTGAGGATTTCAAGGGTTACGCGCCCAAGTTTCGTGAGCATGGATATGACACCACGGGACTGTTATTTGGAATAACTGACGCGGTTGAGGTCGACTGCAGTAAGCAGTATGAACGTCACGTTTTGTATACAGCTGTTTGGACAAAGGATCTTTTGAAGATTGGCATCAAGATAAGGGGGCATCGCCAGAAGCTCCTACGAGAAATCAAAAAGATCCCTCGGCTGGAGATCGAGGAAGGCATCCCAGACAATGTAAAAGAATGGTTGGAAGAGCTTGGACTTGGGGAATATTGGCCCACGTTTAAATCAAGTGGATATGCAGAACCCAGTGACTTGGAGGATTTAAAAACGATGGGAAAGGAAAACGTGAAAGAAACTCTTGACATCCACAAACCCGGCCATTTTAACAGGCTAATATTTGGAATTCTCAAGCTAAAGTATCCTGATCAGGGACAGGAGAAAATCCATCGCACACGTCGTGAACTTGATCGTCTTCCTTTGTACTACATGGACGTTGACAACCAAGACGACGGTATTGAGTATGAATTCTGGGAAGGTTTCCGTCAAGCCTGCCTCATTCCGGAGCTCAGTGCCTTTAACCAGACTGCTAAGCTGAAAGAAGAACTCGTTAAACTTAGAAACATGGCTTTAGTCATATATGGACTCATTAATGTGTTATGGATTATCTTTCTGCTCTCCTTTGTTCACCTTAATCATTTTAGAGACATCCAACTTCTTTATGGATTTATATATATTATTCAGTTTTTGGCTCTTCTAGGGCATCGTTTTGTAACGGTAGTTCGTGTTTTGGCGCGAACTCCCTGGAAATTAAGAAATAATTAA

Transcript

ANN06765-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G5EBQ8	Chitin synthase chs-2 OS=Caenorhabditis elegans OX=6239 GN=chs-2 PE=1 SV=1
Q8T5G8	Chitin synthase OS=Meloidogyne artiellia OX=42426 PE=1 SV=1
G5ECD6	Chitin synthase chs-1 OS=Caenorhabditis elegans OX=6239 GN=chs-1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001011 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03142 all species →	Chitin_synth_2	Chitin synthase	Family	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR004835 all species →	Family	Chitin synthase	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22914 all species →	CHITIN SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004100 all species →	Molecular Function	chitin synthase activity	Interproscan
GO:0006038 all species →	Biological Process	obsolete cell wall chitin biosynthetic process	Interproscan
GO:0016758 all species →	Molecular Function	hexosyltransferase activity	Interproscan
GO:0030428 all species →	Cellular Component	cell septum	Interproscan
GO:0071944 all species →	Cellular Component	cell periphery	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00698	CHS1; chitin synthase	EC:2.4.1.16	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.