Gene detail

Detailed information of ANN06792-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:56710569...56728518
NR annotation: KAJ7393742.1, hypothetical protein OS493_003401 [Desmophyllum pertusum]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN06792-RA

ATGGGGGCTAAACCCTCATCTATTAGCGACCTACAACATAACCCTGTCCTCCAGAAGTTCACTGGGGAGGCAGCTATCGGGGAAGAGGATGAATTCTGGGACGATATTTTAGCGTTTTCATTTCAAGCTCCATACAACAGTGCTGATGCAAGATTATTGGAAGAAGCTACAGAGCCAATTTGCCAAAAGTTAGTTGGAAACAATTTGAAAACAAGCAATTTTGTCACGCTGATTAAAGTGTTTTTAAAGAGAATTCCTGATCTTAAAGACAACACCAAATGTGAAGATGAGGACTTCACGTGGGAAACATACAATGCTATCCTTCTGGTGCGAAGTTTTTCAAAGTATTTTATTGAGTTTTTACCCAATGAGGAAGTAATAAAGCAGTTAGGTGGCTCAGTTGTCAAGTCACAGGGAGATGAAGAGGTGTCTGGCTTCACTGAACATGTATTGCATTGTACAGATTGTGGTATCATTGAGGATCTTATTTGTGGGCTTGTAGATGTCATTATAAATGTGCCTGTCAGTGAGGTGACATATCCTATTCATGTGGAAGCAATCAATACATTATTAGTTATGTTGTCGGTTCAAATGTTTGACCCTGGAGCCTCTCACAGTAGCATCTTCTACCAAGTCATCATGAAAGGAAGATGTCATTCAAGTGCAGATGATCTTGTTAGAGTTCTGTTGAAGAATTTCATCAAAAGAGAGAAAACTCCACCAGAGCTGACAAGGGTGACCAATGGAGGCTGGTTCTCTGGCGTTTGGTCTTGGTTTGGTTCTCATAGTGCAGATGAAGATGATTCATCTCTTCTGGCAAATCAGAGCTTGCTGCTGCTTCTTGTTCTTGTTAATCATTGTACTCAAGACAAGAAGAAAATGAATCCCTATAGGCATGCACTGTTTTCCTTCACGAACAGAAAAGTCAAAGACAGTGCAGCTGAAGATGGTGAATCAGAACAGAATGGCAAACCACCATTTACTTTACACATTGGCATGCTCTATACTGCAATTTGCAGAGACTTGCACAAAGACCAAACAACGCTTCTGCTATACTTACTACTGCATCGCAATCCCAATGTGGCAACTTTTATCCTTTCGAGGACGGATATTGATAATTTGGTGATGCCTATTTTAAAGCTGCTCTACAATGCAGATGATCACAATGCTCACCATATTTATATGTCTCTTATTATTCTACTTATCCTGAGCCAGGATGAGAACTTCAACAAATCTGTCCATGAGCTGATAATCCCCTCAATCCCATGGTACACGGAGCGAGTCATCACAAACATCACTCTTGGAGGACTGCTGGTGTTGGTGGTGCTTAGAACAATTCAATATAACATGACAAAAATGAGGGACAAATACCTACACACAAACTGCCTGGCAACGTTAGCTAACATGTCTTCACAATTCCACGCTCTTCATCCATATGTAACACAGAGAATAGTAAGTTTATATGCGTTGCTGTCCAAGAAGCACGCTAAAGTGATGGAGCATATCAAACAAGCTGAAAGTAACCCACAAGAGAATGCCGAGGGAGCACGTCACAGTGATTATCTTTCGGATTTGGCGATACTGGAAGAAGTGATTCGAATGGTACTGGAGATCATAAACTCGTGCGTCACCAACACCCTTCATCACAATCCAAACCTGGTTTACACACTGCTTCACAGACGGGAGTTGTTTGCTCAGTTTAGAACGCATCCGACTTTCCACGATATCATAGAGAATATCGACACAGTGCTGGCATTTTTCAGTGCCCGACTGGAGCAGCATCCTGATCAGACGCTGTCTGTGGGCGTGGTTTTAGATGTCATTAAACAAGGAACTCTTCAGTGGCCGAGAGACAGATTAAAGAAATTTCCCGAATTAAAATTTAAATACGTTGAGGAGGAGCAGCCCGAGGAATTTTTTATCCCGTATGTTTGGTCACTTGTTTACAAATCATCCACACTCTACTGGAACCCAGATCACATTCAGCTCTTCCACCCTGAGAAGGAGGAGACTGGAGCTTAG

Transcript

ANN06792-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZLW3	Dymeclin OS=Gallus gallus OX=9031 GN=DYM PE=2 SV=1
B4F766	Dymeclin OS=Rattus norvegicus OX=10116 GN=Dym PE=2 SV=1
Q8CHY3	Dymeclin OS=Mus musculus OX=10090 GN=Dym PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007127 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09742 all species →	Dymeclin	Dyggve-Melchior-Clausen syndrome protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019142 all species →	Family	Dymeclin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12895 all species →	DYMECLIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0007030 all species →	Biological Process	Golgi organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23951	DYM; dymeclin	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.