Gene detail

Detailed information of ANN06798-RA in Leptoseris scabra

Genomic Location: Scaffold_5__1_contigs__length_58733080:56812029...56825077
NR annotation: XP_029212102.2, uncharacterized protein LOC114975950 isoform X2 [Acropora millepora]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN06798-RA

ATGGCAGTTTTATCGATAGCGGTTTTCATTATACAACTGGCCGCTGAGGATACATGTGACTCAGTGAAACAGCAATGTAAAGACACCCCGGTCGGGAAGAATTTCGGGGATACGTCCACTATCTTCAACAGTGAAAACAAAGATGGTGAAAAATTGGTGTTTCATGGTAACGCTAAGGAACCGATACAATTTGATGAATCATCGAACGAACAAATTGTTGACGGGGCAACCGATCAGCTCCGGGGTCATTTAATGAAGTTGGGGGAGCAAGGCTCAGTTATCCATGGTGAAATAGAAGATATTGATTATGTTCTAAATGGGCGAGATTTTTACACCCATTTCTTGAGAAAAGGTAGACCACTTGTGATGAGAGGTGCTGCTGCTGATTGGTCTGCTGTAAAAAACTGGGCAAATGAAACATACATGAGAGAAAAATATGGTCATGTCGTGTTTGATGTTGAGTTTACCAAACACTATGAGAGAATACATCCAATTAAAAAAACCATGAACTTGAGTGAATACCTTGATATTTACAAAAGCAAGCAAGTGTACTTGGATTGTCCTTTTCCACAAAGTGATCTGACAAGTGACATTATGGTTCCATATTGTCTTCAGTGTGACGAAGTTATGTCCACCATTACGAGTATTCATTTATTGTACAGCAGCGGCAACACAAGCTCAAGTCTTCATAACGATGGGTATCAGAACCTGCTTACCCTAATTTCTGGAACAAAAGAAGTTCTTGTTGCTAGTAGTGACAACGGCGAACATTTATATGCCAATAATTACACAACAGTTCCTGGTTTATCACCTATTAATCCTGAGTCAGTAGATCTTAAGAAATTCCCTAATATATCAAAAGTGTCTTTTCATAAGGTTGTGCTGAAGGCAGGTGACATTCTTTATATCCCTCAACACTGGTGGCATCATGTCAGATCATTTGATTGTCCAAACATCGCAATTTCTTTGTGGTTCCATCCATTCGCTGAGAAAGAAGATGACAAGAACCTTGAAATGGAGGATGAAACTGAAGATCCAAGCCTATATGAAGATATTGTATACAGCACAAGAATCTTTGATAAACTTATCAAGACTTATCCAGATACCATCAAGTGCCAATCACAGAACAAGCCAATCACAGAAGCCTTTCACCCAAATTCTGATACATGGGACACGCCCAAGGAAAACAAACTGGAGGACAGTTTTGTTGCTCTCGCCAGTGGATATAAGAGTAAGCTTTTCACTAACAAATCTGTGTGTAGGAATCCAACTTACCTTGTTACTGCAGTGCCCAAGCTTGGTTTTGGTACGGCTGGATTGTTTGAAGACACCAAGTCTGCTGTGTCTGTGGCACTCAGCTCTGGATACAGGATGATTGATTCTGCCCAAGCATATAATGAAGAGCACGTAGGCTTTGCCCTGCAGGAAAGTGGCATACCAAGAGAAGAAATTTTCATTGTTTCTAAAGTTCATCCTCGATTCTTGGGATACAAGGAAACACTGCAGTCAGTGGAGGAGTCGCTAAAGAATCTGAAGGTCAGTTATATCGATCTTATGTTGATCCACTCCATGGACTGTGACGAGGGGCCTGGGGCCCACTTAGTATGTCAGAAGGGGGAGCCTAAAGGAACATGGGAAGACTCATGGAAGGCTTTGGAATCTCTTGTCGACCAAGGCAAAATTCGAAGCATTGGTGTCAGTAACTTTGAAGTTCAAGATTTGCAGCGGCTACTGGAAATCGCCAGAGTTCACCCTTCAGTTGTGCAGAACTTTTTTGATCCATTTAACCAAGATCTCGTGACGCGGAAATTCTGCGAGGGAAATAATATACAGTACATGGCACACAGCTCGCTCGGGGATTCTTGGAAGAGAGAAGGCCTTCCTGTTAACCCTGTCTTTGCCGATGAAGATCTCCGAAAACTCGCCTCCAAATTCGACGCTTCCATTGCGCAACTTGTCTTAAAGTGGTGTTTAGAGAATGCTATTTGTATTCCACGGTCTCGCAACCCCAACCACATCCAAACAAATTTTCATTTGTCGCACGTCCTTCTTAATGACCAAGACAGAGATTACTTTGAAAGCCTTGACGGAAAGATAGTCGTGCCCGACGACGGACCTCCGTTCGACTCCCGATCAAAGCCGAGCACTGGCGATGAAAGCGCGAAGAGCAATGCCGACAGCATCAATGATAAAGTTGTGTTAGTGGAGAAGGTTAATCCGCAGGATCCCACACTGTACCTAAGTTCTGATGATCATTGGATCTACGCTTTTGACGCTGCAACAGGGAAGGTAAAATGGAAATATGGAACAGCAGATGAAGGTGGTTCAAAATGCGTCTTCAACTTAGACGCTACTATTGTATACTGCGGGACCGACGACAAATCACTCCGCGCGCTCGACGCCGCCGACGGTTCCCTTATTTGGAAGTTTTCGACCGGAGGTGCAGTGACGTCTTCAACCAGAATTGGTGCCGACGGCAGTCTGTATTTTGGATGTCTGGATGGGTATTTTTACGCTGTTAAACCTGATGGTTCTTTGAAATGGAAGCAGAACTTGGGTGAAGAGATATGGTCCTCCCCTGCTATTCTTTCAAGCGGCAAAGCTATCTTCATAGGCTCCATGGCTGAAGACTCGGCGAATGTTTATTCCCTTGACAGTGAAACTGGCGAGATAATATGGAAATACCAGACTGGTGGACCTGTCTTCTCCTCTCCGGCTGTTGGCTATGATGACAAGGCTGTATTTTTCTGCTCATTTGACTCTAACTGCTACGCTTTTGACACTGGAAATGGTAAAAAACTCTGGGAATTTCAGGCCGACTCAGCTTTTCAGTCTTCACCAGTTGTTAGCAAAACTGACGGTACTCTTTTCCTGGGCTCTTCAGAGGGAAATATATACGCTGTGGACTCCGCTACAGGCAAAGTGAAGTGGACAAGAGAAGGTAAGGGTGAACTCTTTTCCTCGCCTTTCGTCGCTCCTGATGGTAATATCTACATTGGATCTGGAGAAGGCGAAGTATTGGCTCTTCGTCAAGCTGATGGCTCGCTCGTGTGGAGTTTTAAGACGGAGTCAGCTGTGTGGTCGTCGCCTCGGTTGGATAAGAATGGCGTCTTGTTCATAGGAGGGATAGATACCTACTTGTATGCTTTGCGAAGTGAAAACGGACATTTGGTGTGGAAATACAAGACGGACGGACCTGTCGTTGGAACACCGCTGATCACTCGTGAGCATGCAATGGAACAAGCTTAA

Transcript

ANN06798-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O32210	Glyoxal reductase OS=Bacillus subtilis (strain 168) OX=224308 GN=yvgN PE=1 SV=1
Q4DJ07	9,11-endoperoxide prostaglandin H2 reductase OS=Trypanosoma cruzi (strain CL Brener) OX=353153 GN=Tc00.1047053511287.49 PE=1 SV=2
P22045	9,11-endoperoxide prostaglandin H2 reductase OS=Leishmania major OX=5664 GN=P100/11E PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001351 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01011 all species →	PQQ	PQQ enzyme repeat	Repeat	Interproscan
PF13621 all species →	Cupin_8	Cupin-like domain	Domain	Interproscan
PF00248 all species →	Aldo_ket_red	Aldo/keto reductase family	Domain	Interproscan
PF13360 all species →	PQQ_2	PQQ-like domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR018391 all species →	Repeat	Pyrrolo-quinoline quinone beta-propeller repeat	Interproscan
IPR002372 all species →	Repeat	Pyrrolo-quinoline quinone repeat	Interproscan
IPR041667 all species →	Domain	Cupin-like domain 8	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR020471 all species →	Family	Aldo-keto reductase	Interproscan
IPR023210 all species →	Domain	NADP-dependent oxidoreductase domain	Interproscan
IPR018170 all species →	Conserved_site	Aldo/keto reductase, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036812 all species →	Homologous_superfamily	NADP-dependent oxidoreductase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43827 all species →	2,5-DIKETO-D-GLUCONIC ACID REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12373	HEXA_B; hexosaminidase	EC:3.2.1.52	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.