Gene detail

Detailed information of ANN07148-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:4943272...4964644
NR annotation: CAH3045469.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN07148-RA

ATGGCGGACGAGGACGAAGTCGAAATTCGCGGAATAAAAAGACCACTTGTTGAAAATTATAGCGATGAAGAAGAGGAAGAAGAGGCTAGAAGAAAGGAAGAGCACAGTGCTTACCAGAGCAGACATTGCCCATATCTTGACACCATAGACAGACATGTACTTGACTTTGATTTTGAGAAGCTGTGTTCTATTTCTTTATCTCACATTAATGTTTACGCATGCTTGGTGTGCGGAAAATACTTTCAAGGTCGAGGTCGTCGTTCTCATGCCTACACACACAGTGTACAAGTTGATCATCATGTGTTTTTAAATCTCCATACATTAAAGTTCTACTGTTTACCAGATAACTACGAAGTTATTGACTCATCGTTGGATGATATTAAGTATGTTTTAAATCCAACATTTACCAAAGATGACATAACGCATTTGGATCAGTCAGCAAAGCTGTCTAGGGCATTTGATGGGACAACCTATTTACCTGGTATTGTTGGCCTAAATAACATCAAAGCAAATGATTATCTGAACGTGATCTTACAGGCATTAGCATTCATTCCTCCAGTACGTGATTTTTTTCTGAGAGAAGAAAACTACCAAAACATCAAACGTCCTCCTGGAGATATCATGTTTCCTTTAGTTAATAGATTTGGAGAGCTTATCAGGAAGATATGGAATCCTCGTAACTTTAAAGCCCATGTCAGCCCTCATGAGATGTTACAGTTGTATGTCTGTACTGCTCAAATTCAATGTGCTCTTTATACACTAGAGACGTACAGCGATGCTAGCTTGGAAAATTTTTGGCGAGCAGAATGGGGAGGCGACATTTTCTTTGCGCACGGCTCAAAACACAGTAGAGGTGTTATGATTCTTTTCAGTCCCTCGCTCAGTAAAGAGGTGACGAATGTTACTGCGGATAAAAACGGCAGATTTATTATTGTAAACACCACCGTCAACGAAGACGAATTGTGCCTCGTTAATATTTATGCCCCAAACGACCAAAACCAGCAAATTTCATTTTTTCAGAAGATAACCGATTCTATTCGTGGCCAGCAAACTGACAAAATTCTTATTGGTGGAGATTTTAACTGCCCACTGTCCGCTTCCGATAAATTTGGAGGTAAAGACATTCAATTCAAAAAAAGTGTAATACATTCGATCGACGAACTCCGTTGCAACTATGACCTAGTCGATCCCTGGCGAGAACAACATCCACATGATACACAGTTTACGTGGAGAAATAGCTCCGGGAAAATCAAATGTAGACTGGATTTCTGGCTCATCTCGAAGCATTTATTATGCCGCGTTTCGAAAACCGACATTTCCGCCTATCATGATTCAGATCACTCCCCTGTCACCATCTCGATCAAGCCTGAAGACAAACAAGAAGAAAGAGGCCCAGGCTACTGGAAATTTAATAATTCACTCTTAGAAAATGAAGATTTCGTCACAAAAATGAGCTTCATCATCAAACACGCCGCCCAAAAACACAAGGATGTTGCTGATAAAAGGTTACTTTGGAAAATGTTGAATATGGAGATCCGGATATTTGCAATTCGTTTTGCGAAAAAGAAAGCCAACGCTGAAAGAAGTACGGAATTGAACCTCCTCCAAAAGCTAGAGAAAATCAACTCACATATCGACGAAACCCCAGAAAATAGCTCCCTTGTAAACAAGGCTAGAAAACTCAAGATCGAATTAGATGAAATTGCCGTGCAAAAAACTAAAGGGTCTATTATCCGGAGTAGGGCTAGATGGTATGAATTAGGAGAAAAATGCAACAAATACTTTTTTAACTTAGAAAAAAGAAGTTATGTAAAGAAACATATAACAAAGCTGAAGACACCTGACGGTAGCACTGTAGAGGATCCAAAAACTATATTAACCGCCATGAAAAATTTTTACAATCAGCTTTACACCTCTCAAAACCAGCTTTCAGCTGAACGCTTTTCTACCTTTTTCGATTGTGAATCCTTACCAAAACTCGACAGCACAAAGCAAGACCTTTGCGAAGGTCTGATAACCGCAGAGGAATGCCTTGCCGCGTTGAAAACGTTTCAACCTAACAAGACTCCTGGCACAGATGGGTTAACAGCAGAATTTTACCTTCGTTTCTGGCCCGATGTTTCTGGTCCTTTGATAGACTGCTTCAATCACAGTGCCTCACTAGGAGAACTTTCTATCTCTCAGAGTCAAGGAATCATCTCCCTGATCCCAAAAAAGAATAAAGATCCTCTTCTGTTAAAAAATTGGCGCCCTATTTCTCTTCTAAACACAGACTACAAATTAGCAACCAAATGTATTGCGAAACGTTTAGAGAAACTACTTCCGTACTTGATAGACGGTGATCAAACTGGGTACATCAAAGGTAGATTTATTGGTGAAAATATTCGCTTAATTTCGGATATAATTGAACAATATGAAAACAAGGACGGAATGATACTTTTCCTTGACTTTGAAAAGGCCTTTGATTCTTTAGAATGGGACTTTCTCTTTAAAGTGCTTAACACTATGAATTTCGGTCCAAGTTTCCTCAACTGGATCAAAACGTTTTACACCAACATTTCTAGCTGTGTTGTAAATAATGGCTACTCGTCGGAATTTTTTTCTCTCCAAAGGGGTGTTAGACATGGTTGTCCTCTTTCAGGCTTACTCTTTGTTCTAGCTGTGGAGCCACTCGCCCACCAAATAAGAATCGATGAATCAATCAAAGGACTTGAAAACGGAAATAAGATCACTAAACTCAGTATGTACGCTGACGACACCACCGCTTTCATTCGCGACGATTCATCCGCGGTGTCCCTACTAACTCTTCTCGATCAGTTCGGTGACCTTTCCGGCTTGAAAATCAATAAGTCTAAAACCGAGGGTCTTTGGCTTGGTCCTTTGAAAAGTCGATTAGGCAAAGAAGAACCTTTTGGCATTTCATGGCCGAAGCAATACGTCATTGCGCTTGGAATCGCTTTTCCTTATCATGTTCAGGCTGTAGTTCTATGCAGTAAGAAAAGATTCCAGTTTACTGAACAAGGTGACCCTGTGGAGTTTTTATCCTGGTTTTTAAACTCTCTTCATACAACTCTTGGAGGAACAAAGAAATCAAAAAGTAGCGTAGTTTACAAAACATTCCAAGGAAAGATGAGAATAACCTCTCGAAAACTTCCTCAAACTGAGAATGAAGAAGAAATAAAAAAGGTGGCTGATGAGGAAGAATACAAAGAGACCACAACTGATTCACCGTACATGTACCTCATGTTGGACATTCCAGCTTCACCTTTATACAAGGATGAATACCAGCAGAACATCATCCCTCAAGTACCTTTGTTCCAACTTCTTAGTAAATTTGATGGCAAAACAGAAAAGGAATACAAGACATACAAGGAAACATTTGTCAAGAAATTTGAGCTCACAAAACTTCCAAACTACCTCATTATGTGTGTAAAGCGCTTCACCAAGAATATGTTCTTTGTGGAGAAGAATCCTACTGTTGTAAATTTCCCAGTCAAGGGGGTGGACATGGCAGAGTATTTGGTGTCAGATCCTGCCATACAAGACACACATCCACACACACAGTATGACCTGATAGCAAACATTTGTCATGAGGGAGAGCCTGGCAAAGGTGCTGGAAATTTTAAAGTTCACATTCTGCATAAAGGAGCAAACAAGTGGTATGAGCTTCAAGATCTTCATGTGAAAGAAATCCTGCCTCCTGTTATAACACTGTCTGATTCCTATATACAGGTATCTTAA

Transcript

ANN07148-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3TIX9	Ubiquitin carboxyl-terminal hydrolase 39 OS=Mus musculus OX=10090 GN=Usp39 PE=1 SV=2
Q53GS9	Ubiquitin carboxyl-terminal hydrolase 39 OS=Homo sapiens OX=9606 GN=USP39 PE=1 SV=2
Q5R761	Ubiquitin carboxyl-terminal hydrolase 39 OS=Pongo abelii OX=9601 GN=USP39 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005833 (this species only)
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02148 all species →	zf-UBP	Zn-finger in ubiquitin-hydrolases and other protein	Domain	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001607 all species →	Domain	Zinc finger, UBP-type	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31635 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN07148-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.