Gene detail

Detailed information of ANN07161-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:5202237...5226551
NR annotation: CAH3031271.1, unnamed protein product [Pocillopora meandrina]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN07161-RA

ATGCTTCAGGCCAATGGTGCTGGACCAAGAAGATCACCAAAGAACTCGCCTAATTTAGGACCACACACAGAAATAAAGCAACAGTCTGCAAGCCAGTATGCTGCAAGAACAAATTTTCTTCTTGAGCATTTATCCTCATTCACTTTAAAAACGTTTCAAGAATCTCAAGTCCCTCCACAGGAAAGACTTAGGCAAACCAAGGAACTGCTAGCCAGAGGAAATCAGTGGACGAAGGAGATGGAGATGAGATTGACAGATACTGATGTTGTACTTTTAGATGGAGAAACACAGGATGTTGTTGAAGTATTCCCCTTAAGTTCAATTGGACATGTACATCACTTCAACGATGATCCTGACTTAAACAGCGTGCTCGTGTTCAACACGCTGCAGACAGAGGACAAGTTTGCCGCCATGCATCTATTCCAGTCTGACAGGGTTCCTTCAGCAGTTGTGGCCACAGAAATTATGAAAGCTTCCAGCAGTAGAACGGCTATGCCTCACAAATTTGCTGCAAGAGGTGGTGTCATCCTACCCCCACCCCCTACTCATCCAGCACCTCCACCCCCTAAGGAGGTTGATCAAGAAAGGTTAGATCTCTATGAGAAATCACTGGTGGCCCAAACCATTGCAGCATTTTCTGCGGTGTCAGACAACAGTGCAAAAAAACCTGAAAAACCACAACTTTCCTCTAAATACCAGGCATCAGAATCATCATCTGATATTCCTGATGAATCGCTGTCAGCTGAAATCTTGGAGGGACGAACTAACAGAGACGTGCAAATTTTAAACCACTGTATTGATGACATTGAAAACTTAGTCATAAGAACTAAAAAGTCTGCTGAAGCATGGAAAAAGTTGCAGAAAAAGAAAGGAAAGGCTAAACACTCAATGGAAGCCCGACCACCTCCAGAGGCAGATTTCTACGATGCTTTTCAAAAATTTAAACATGCATTTAACTTGCTGTCCAGGTTAAGGCAGCACATTCACAATCCAAATGCCGCTGAATTAGTTCATTACTTGTTTGTGCCTCTCACTTTGTTAATTCGCTGTACTGGAGGTCCTGAAAAGGCCAGAGCAGTTGTGGTACCTTTGCTTTCCACTCAAACTGTGGAATTCCTGCAGAACTGTTTGTCATCTAAAGAAATTGAACTTTGGAATTCTCTAGGACCAAACTGGACCCTGCCAAAGTCAAGCACAAACTTCAAGGATCAGTTCATTCCACCATACACACCAGTGTTTAAAGATGGCTGGGTGCCTCCACAGGTTATTGCTGGTAAAGATGTGTCTAACCTTAGTGCCGCCATTGCTGCTAATGCCGCAGCTGTGGCTCAGCTCAATGATGAACACAGAAAGGGTGAAGATCCTTCTATTGTAACAAATCTGGCAAATCCAGCAGTTCTTTCAGCAGCAGCCAAGTTCAGACGTTTGACAAGTGTGAAAAAACCAGAAGGGGTCCCACCAACCAGTCCAACCAAAAAAGGTTTAAGGAGAGTTCGTGTTCTTTATGACTTCCAAGCTAGAAACAGCAAAGAGCTGTCAGTTCATCAGGGAGAGGAAGTTGCAGTTCTGTTGGATTCTCGTCAGTGGTGGTGTGTTAGAAACTCAGAAGGAGCCATTGGTTTTGTACCAAATACAATCATTGAAGAAACAGTGGTCCTTCCCAATCCTCCAACAACAGCTCCTCCTCCTGTGCCGACATCACAGTTGACGTCATCTCAAACAGTGGTGCAGAAAACAGAGACTTCAACTCATGTGTCGTCAGCACCACGACCTCCAGCAGCTGAAAGCCCTAAGGTTCCTCATGTGGAGCTGCGCCCTGTTGGACTGGCCAAACCAAATCGCCCTGTCTCTGTACCCCCTTCACAGTTGCTGATACCCCCTCCCCCACCCTCCAACCCTCCACCTACCACACCCCCTCCCCCTGTAATTACAACTGTCAATGTTACTACTCAAAAGGAGAAAGAAACCACTCTCACCGAAACGGCAGACTTTGCCAAGGCTATCCAAGCAAAGAATCTCAAGAAAGTTGATGTAGAGGCCGAAAAGATACGACGAGAACAGGCTCAGCAAAACAGAATGAGCTCGGCAGATATGTTAAATGATGAACTGAAGCGAAGGATGACCTCAACCCAGGGTGGGCTGACACCAAGGGCCCAACGTAAAGAATCACAGCCAGTTGTTAACTTGACTGCGGACTCGAGTGCCAGTGAAGTCCAGGATTGGCTCAAGAGCAAAGGCTTCAGTGACAGTTGTGTGACGGCTTTGTCTAATAAGTCTGCTAAAGACATGGAGCTCCTTACAAAGGATCAGCTAAAGCAAGTTTGCGGCGACTCTGAAGGATCCAGGGTGTTTAGTCAGTTTGCGGTGCAGAAGGCTAACTGGAAGGTGGCTGACAAGGGATCTGAATTGGCGTTCATAATGAAAAAACGGAAGGAGCGCTCAGAGGAACCAGGGGAAAAAGAACCGGAAAACGCTGGCGAGCTGAGAAGCATTGTTGCGGGCGCCAAGGCTGCCGCAGCCGAAGAAGAGACACAAGTTAGACTCAGGACATCAAGCACTGGTAACAGAACAGGACAACTTGGTGCACCTGCCGTTAAACCACGTCCTAAGAGCATTGCGGCGCCTGATGCTAGTAGGCCGCGGTCTGATAGCAAAACAGAGCGCAAGTTATCCAGTGGAGAATCGTTTGACAGCGAGTTCATCCCCCCTCCACCCGTGTTGGATACTGAGGAAGAATCGAGAAGCGAAGAAGAGAGCCCAAGGGAGAGAAAGATTTCTGTGAATGAAGTTGACAAAATTGTCCGCGAGCAGAGGAAACAACAGGGACTACTTTTGGAACACGATAAGCAGCTATTCCTGCTTGAGCAGCTTCAAAGACAAAAGTTGGAGCTGGAACAGCAGAAACGCGAGTTTGAAGAACAGCAAAAGAGACAGAAACAGGCAGAGTTACAGGACCAGCAGAAGGAGCTTCAACGTCAAATTCAAGCGCAGCAAGATCAGCTCAAAGTAAACGAAGACAAGCTACTCCAGCAGCAACGACTTCTTACAGGCTACGACAACATCGCCCCTCCGATCTCCTATGCCCCGATGCCCCCTGTAATGCCGCAGCTCCCAATGATGCCCCTAGGGAGTATGCCAGCCACAGCTCCCACGTACCTTTCTATGGGGGGCATCCAACCCATGTACACACCATATACTACTACAATGGCTTCGACCGGGGTGCCTCATGTTATCCCTACCATCGGTCTACCTACGGTAACTACTACACAGCCTCCAACATAG

Transcript

ANN07161-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08509	Epidermal growth factor receptor kinase substrate 8 OS=Mus musculus OX=10090 GN=Eps8 PE=1 SV=2
F1M3L7	Epidermal growth factor receptor kinase substrate 8 OS=Rattus norvegicus OX=10116 GN=Eps8 PE=1 SV=2
Q5R4H4	Epidermal growth factor receptor kinase substrate 8 OS=Pongo abelii OX=9601 GN=EPS8 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002377 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08416 all species →	PTB	Phosphotyrosine-binding domain	Domain	Interproscan
PF18016 all species →	SAM_3	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035462 all species →	Domain	Eps8, SH3 domain	Interproscan
IPR039801 all species →	Family	Epidermal growth factor receptor kinase substrate 8-like	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR013625 all species →	Domain	Tensin/EPS8 phosphotyrosine-binding domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR041418 all species →	Domain	SAM domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12287 all species →	EPIDERMAL GROWTH FACTOR RECEPTOR KINASE SUBSTRATE EPS8-RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007266 all species →	Biological Process	Rho protein signal transduction	Interproscan
GO:0035023 all species →	Biological Process	regulation of Rho protein signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17277	EPS8; epidermal growth factor receptor kinase substrate 8	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.