Gene detail

Detailed information of ANN07173-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:5378676...5390433
NR annotation: CAH3180457.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN07173-RA

ATGGATGCGAGTGAACTTGCCCTTTTCTTGATAGAATGTGTAGTTCCAGAAAATATCCTTACCCCACCCATGGAGGGAATTCAAGATTCTGGAGGGGATGGTGTGGCTGATTACAGTGTGAGGATAAAGACTGGAACAGTGAAGAATGCTGCTACAGACTCCAACATTTACTTACAAGTGTTTGGTGATAAAGGTGACACTGGAGTCATCGAGTTAAAACAGATTTGCGACACCAAAGACAAGTTTTTGCGCGGAGCAAACACCAAGATTAACTTACAAACCGTGGATGTCGGAAATCTGGAGAAAATTCGTATCGGCCATGATGGCCGTGGTCTTGGGACGGGTTGGTACCTTGAGGAAGTGGTGATAATTATCCACGATGAATGCTGGATCTTCCCTTGTAACCGCTGGCTGGCTGATTATGAGGATGACGGAAAAACAGAGAGGGATCTGTTTGCAGAGAGGAAGACCTATGCACACGAGCCTGACCTGCAGGATTTGATAGAATACTTACAAACTGATGATGTGACGCTTATTGTGAATGCGGCCAATTATCTGCAGCATCTCTCTTACAGTGATGAACAAGTAAAAATAAAAGTGCGTGAGCTTGGTGGGATTCCCATTTTAGTTCGACTGCTCGATCATGAATTAGAAGAAGTTCATCGATCAGCTGCGGCTTGCTTGAGGAATTTATCATTCAGCAAAGCAAGGGACGAGAACAAGGCAAGTAGCTTTGTGAAACAGATCGAGTCAGGCCCACTGGCAATTGCCGAGTGTTATGGTATTGAAGCTCTGATTAGACTGTTAAAAAGAACTAGAAAGGATGAGGTCAAAGAAGTGGCTCTGGGAGTTCTATGGAACCTTTCGTCTTGTGAAGAACTAAAACTCCGTATCATCGAAATCTGCTTAATAGTTCTAATTACTATTATCATTATACCGTACTCTGGTTGGACGAAAACCGCTGCCCAGAGCAACGCGCCTATCCCGTCAATCAAGTGGTCGACCGTGTTCCGTAATGCCAGCGGTGTCCTTAGAAACGTGTCCTCTGCGGGACCTGAGGCGAGACGAGTCATGAGGGACTGCGAGGGACTTGTGGACTCTTTTGTTTGGATCATAAAAGCGCCCATTGGCAAGAATGATATTGATAATAAGTCTGTAGAAAACTCCATTTGTATCCTTCGCAATTTATCATATCGCCTGGAAAACGAAGTAGACAGAGAAAGATACGTGGACGCTCCTACAACCGAATTAACCCGTAAGGAACCCGAGAAACCCGATCCTGGTTGCATGGCGGGTTGCGGGACGGGATCGAAGAAGAAAAAGAAAGGAATAGTCAGAGAAACGGACCAGCCCCAAATAAGGAAGGAACCGGTGGAGGGTGTAGAGTTACTATGGCAACCGGATATAGTCAAGTCGTACTTGTCAATAATGGCGGAAGCTTCCAATCCTGAGACGTTAGAAGGGTCAGCGGGTGCTATACACAATCTGACAGCCTGCGGCTGGCGGTGGTCTATGGTGGTTCGTTCCGCAGTGCGAAAAGAGAAAGGCCTTCCCATCTTAGTGGAGCTTTTACGAATGAACTACGATCCAGTGGTGAGAGCTGTGGCCACAGCGCTTAGGAATCTAGCCATTGATCCTAAGAACAAGGATCTTATAGGTAAATACGCCATGAAGGATCTTGTTCATCGTCTTCCCGATCCTCTGACCCCGAATGCCAGAGTGGAGGAGAACACTGTTGGCGCCATACTGTGCGCTATTCATCAGGTGGTGAACAAGAGCATTGAAAATGCAAGACACGTCCGTAATGTTGGTGGAGTTAAAAAGATTATTCCGATAGCAAAGTCCAGAGATAGGTACTCTCCCAAGATTGTTAAGACGGCTAATCAGGTTTTAATAACAATGTGGAATTTAGCGCCTCTTCGAACCTCGCTCAAGAAAGAAGGTTGGGAATTTACCAAAGAAATAGGTGACGAGTTTGGCCATGTGCCTCCAACGCCGCGCCCTTACGAAGATATAACGATACCACGTGGGAGACAACAACCTCCTCCGGCTTCCAACCGAGAGCCTCGACCGATACAATCCGACGAAACTTCGATTCCCGCACCTCGACGATACGAACCTGAACCGAGCGTTCCTCCCCAGAGGTTTGCCGTAGATGGGTACGAAGCCGACGATGACGCTCGACGACGATGGGCGCCGAGAGATGAACGGGAAGAGGTGGAAATGGAAGATATGGGAGGTTATCGGGAGATTGATCGTCGTCCTGATCTCGAGCGTAGCGGTGGTATTCAAGTTTTACCACCGGCGTACGACGGTAAACCGCCACAAGAAGAACCACAATACGCTCAAGTAGATAAAAGCAAAAAGAAAAAGTATCAATTGCAAGGAACTGAAGGTCCACAAACCGACTCTTGGGTTTGA

Transcript

ANN07173-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UQB3	Catenin delta-2 OS=Homo sapiens OX=9606 GN=CTNND2 PE=1 SV=3
O35927	Catenin delta-2 OS=Mus musculus OX=10090 GN=Ctnnd2 PE=1 SV=1
B4F7F3	Splicing regulator ARVCF OS=Rattus norvegicus OX=10116 GN=Arvcf PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002240 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan
PF01477 all species →	PLAT	PLAT/LH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR028435 all species →	Family	Plakophilin/Delta catenin	Interproscan
IPR001024 all species →	Domain	PLAT/LH2 domain	Interproscan
IPR036392 all species →	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10372 all species →	PLAKOPHILLIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0007043 all species →	Biological Process	cell-cell junction assembly	Interproscan
GO:0045296 all species →	Molecular Function	cadherin binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23491	CTNND2; catenin delta-2	-	Wnt signaling pathway	ko04310	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.