Gene detail

Detailed information of ANN07421-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:10771960...10775205
NR annotation: CAH3030083.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN07421-RA

ATGGTTAATTTGTCTGTCTACTTGTGTTCTGATTCGTTAAAGAAAAATCAAGCAATTTTTATTATTGAAAGTAAGCAAATGTCCAGTAATGCCCTTAACCCATCAAAGCGGATACGCCAATTACAGTGTTCTGTAGAATCACATAACCCCAGATTCGAAACAAAACAAGGAACTGTTATTCCGTATGGAATAGTTTTCTGTTACCTGGATGGTCGTCAAAGGACTGAATTACCGTTTGATATCAGCGAGCTTCTTAATGTCGCAGGAGTTACTAACAACGAGACCTTTTTTGATTTGTTTGTCAACATTGAATGCTGGTCACCAATATTGCTGAGTTTCACCAATCAAGGCAATGCTGTTAACAAAAACATTTTGCTGGAATTGAGTATCGGGTATGAAGGCAGAATTTCGATGCAAAATCTTGCTGTCTGGGCCAAGGCAACCTACTTGTGGTCATTAGACTTATATTTGTTACCAAGTAATAAACTTAGCCTAATGGATTTATTTCAAGATAATGAAGGTTTTGCAAGCGACTTTAAAGATATTGCTTACTTTGCAACAAGCATCATCCCAAGTATGTTTACTAACCCAAAGATTGTCTGGCCGAACATGGCGGTTTTAAAACTTCACAGAATGTCAATGAAGACGATTCCGTCATATTGGAAAATTACAATGCCCCATCTGCAACAACTTTCTTTGAGTGCAACCAGCGTAAAAGAGCAACCAGAATTTCCATGGAATAACTCCACACTTGATCTTTTCCATGGGTTGAGATGGATCGTCCCTGATGTCGTTTCTTTGCCTGATATCCTCCTAAATTTCGAAAGAAACCTTTATCCGCGTGCACTGAGTCTGGATTACAGTCACATCGAAGATTTATCGTCTTATATTTTTCGCGGATTCCTGCACTATCTTGAACTTAAAGGAAATGGATTAAAAGCAGTTGGACAATCATGTTTCCGCAACTTAGAGGGACTAGAGGCGGTAGACCTTTCTTCTAACAAGTTGGTATCGTTACCTGAAACTCTGTTTCACGGATTAACCTCTTTGCGATACATTTTTCTTGCAAATAACTACCTGTCATTTCTTAAGCCGGAATTATTTCAAGGCTTGAAAAACATCAAAAAAATTGACTTGAATGATAACAACCTTAATTATATTGCAAAGGGATTGTTCAGATCGCTCAACACATTGGAGTTCCTCCATCTAGAGAACAATAAGATCGCATCAACTGACGAAAACCCATTTCCACGACACTCTGCGTTGCGAGAGGTTCTCCTCAAAAACAATCATTTGTCTGCCATTCCCAGTTGGATATTTCGCCTCAATAAAATTGAGATTAAGTTAACTGGAAATCCACTAACTTGTGATTGTGTGATGTCGTCTAACGTATTCACATTTAAGTCGTATTATAAGTCTAATAGAGAAGTGCGACTAGAGGTTTATTCCTGGAAATGTGGTTGGCCACATGAACTACAAAATAAATCGATTCTGGAGGTTAGAGAAAATCAGTGGATGCGTAAAGAGGAGCTGCAAAACTGTCCTGCTGAATGCGTTTGTCGAAAACGTTGTTCAGATGAAATTATTGTTGTCAATTGTGAGGGAAAGAGTCTCGCAGAAGTACCAAGCTCAATGCCACAAGGTCTGATTGAACTCAACTTAAAAAACAATGAAATCAAAGACATTCCTCCATATTCTTATTTGATAAATGTGACAGTTTTGCAGTTGACATTCAACAAAATTGACGAACTACGATTGCCTACTTTAACAAAACTTAAACAAACCCACACTCTGCTGATTGATTCTAATAAACTGAGAAGTCTACCAAGGGAAGTTGAAACTATGAATTTTACAACATTGGCTCTGGATCAAAATTTGTTTAAATGCGACTGCACGACCAAATGGATGAAGCACTGGCTACTGAAAAACAAGCGTCGAATAAAAAATGTTGAGAAGGTGCTTTGTACCTCAGGCCACACCCTTGGACAAGCAATGTTCAGTTTGCCAGATGATGAATTCGTTTGTCCTCCCGTTCGAAATGAAAATTCTAGTGTTCATCATGATGAGAAGAGGTTACTTACAGGAACAATAGTGGCTTCTATTCTCGGTGGTCTGCTTTTCTTAATAATGATTGTTGCGATCCTGCTGTACAAGTACCATGGAGAAATGAAGGTCTTTATGTTTACTCATTTTAACTGGCACCCTTTTGATCGCATAGATGACTCCGATCCAACCAAGATATACGATGCTTTTATATCGTACAGTGGAAATGATCACCAATGGGTCGTGGAAACGTTAAAACAAAGATTGGAGAACCACGATCCTCCTTATAAACTATGCTTTCACTACCGCGATTTTCGTGCTGGAACCCCAATCGTGGAAAACATTCTGAAAAGTGTGGATGAAAGCAAGCGCATGCTGATGGTGCTCTCTCCCAGCTTTGCCAGGAGCGAGTGGTGTTTGTTGGAGTTTCGCGCTGCTCATCGTAAAGTGATAGAAGATCGCATGAAATACCTCATAATTATATATTCTGTTGGATGA

Transcript

ANN07421-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P08953	Protein toll OS=Drosophila melanogaster OX=7227 GN=Tl PE=1 SV=1
Q9DD78	Toll-like receptor 2 type-1 OS=Gallus gallus OX=9031 GN=TLR2-1 PE=2 SV=1
Q9DGB6	Toll-like receptor 2 type-2 OS=Gallus gallus OX=9031 GN=TLR2-2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002891 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF13306 all species →	LRR_5	BspA type Leucine rich repeat region (6 copies)	Repeat	Interproscan
PF01582 all species →	TIR	TIR domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR000483 all species →	Domain	Cysteine-rich flanking region, C-terminal	Interproscan
IPR017241 all species →	Family	Toll-like receptor	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR026906 all species →	Repeat	BspA-type LRR region	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24365 all species →	TOLL-LIKE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0002224 all species →	Biological Process	toll-like receptor signaling pathway	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006954 all species →	Biological Process	inflammatory response	Interproscan
GO:0006955 all species →	Biological Process	immune response	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0045087 all species →	Biological Process	innate immune response	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN07421-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.