Gene detail

Detailed information of ANN07548-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:13488965...13500636
NR annotation: XP_020613394.1, DNA-directed RNA polymerase III subunit RPC4-like [Orbicella faveolata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5E9Z7	DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus OX=9913 GN=POLR3D PE=2 SV=1
P05423	DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens OX=9606 GN=POLR3D PE=1 SV=2
Q91WD1	DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus OX=10090 GN=Polr3d PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005299 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05132 all species →	RNA_pol_Rpc4	RNA polymerase III RPC4	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007811 all species →	Family	DNA-directed RNA polymerase III subunit RPC4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13408 all species →	DNA-DIRECTED RNA POLYMERASE III	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005666 all species →	Cellular Component	RNA polymerase III complex	Interproscan
GO:0006383 all species →	Biological Process	transcription by RNA polymerase III	Interproscan
GO:0042797 all species →	Biological Process	tRNA transcription by RNA polymerase III	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03026	RPC4, POLR3D; DNA-directed RNA polymerase III subunit RPC4	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.