Gene detail

Detailed information of ANN07560-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:13633290...13649413
NR annotation: CAH3168684.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN07560-RA

ATGGGAACAGGAAGTTCAAGAGGCACTCCACAGGTAGTGGCAGCGGATACAAATTTGAATAAAGAGAATAACGATGGTTCTAAAGACAAGAGCATGGAGCAGCACGGAGAAGCCTCAAATCTTGTAGACGAACGTGACGATACAGTGAAAGCGAACGATCAAAACTTAGTAACAGAAGATGTCGACTCATCTCATGATCATTCGATCTCGGATCCGCTGTTAACTTCGTTCAGCGAAACATATCCAGCAATTGCAAAAATTTTGAGGACTACTTACGATCATTATAAAGCCTTGAAAGAAGCTTTGGACAATGGGAATCTGATTTCAAAGGCAGCACTCGATCAGACCCAAGGTTTGGTTAATGTTCACAGGAAGGTGACCCAGAATAAATCTGCATTTAGAGAGTTTGTGGTGGCTCTAGGGATTCCCAAGCTTTCTTATGACATAGTTGTTGACTGCAGGGAGAATTACCCAGAATTAACTACATGGGATCGAGGAAAAACAAAGGAAAAAGACGGTGAAGATGAAGACGATAAAACAGAACAAAATAACGTGGAGGCAGGGAGTAAATCAGAACAAATTGTTGTAAAGGAAACGAATGAAACAAAAATTTTGGTGCAAGGCGATGGCAATCAACAAGAGATTGTGGAGGAAGTGAAGGAAAAGGAACAAACGGTAGGGGAGGAGGGGGATGAGGAGGATAAAGACAAGACAGATGCATTGAAAATGTCACAGAATATCATATCTAAGCTTCTGGCAGCAGTTCTCAACTTTTCCGACCTCAGTGACTCTTTTGTGCTAGCATGTGATGAAGCAGGCTTGATACCAGTTCTTGTTGACATGATTAAAGAACTGCAAGACTCAATTCCTCACCATGTTAAATATGTGAATGCTGAAACACAACAGCTCTCAAAGTACACAACACGTGGTAGAATGCTGTCTACAGTCCTGGGAATCCTTCATAACGTGTCAAAGCGTGTTCCAACAAGGAGCAGCTTTGCTGCCTGTCAGGCTTTGGATGTGCTTATCCCTTTGCTCAAAGCTGAAGTAATAATATATGCTGCCAAGAGCTTGCTTATTTTGGCCTACTTGACTGATGAAGAAAACAACCATGTAATCATGGCAGATGAAGGTCCGATCAAATTCCTCATAAGTATACTAAATAAATCGCTGAGAATGGTCAGGCACAGATATTTTGGCTTCTCCTCCGCGGAGCTTGCAGAGGGACTGACGCAAATTGCAGTGAATGACAACAACAAAAAAACGATTGCTCAATGTGGAGGTATACCAGTCCTTGTAACAATGTTAGAAAAAGCTAAAAGCGACATCGAGAGACTGAACGCGTGTAATACATTGTGGACCTTGGCTTTTGATGAAGACAACAGGCAAGAAATTAAGAACAGCGACTCTGCTCTTCTTGAGCTGCGAAAACTTCTTTTGACAAAGAACAGCGAGTTAAAAAGAGCTGCCGCTGGTACATTGTGGGAATGTGAGGGCAAGGAAAAACACGCCGAGGAAAAACAGGTGTCAATTACAGCTCAAGAAGCAGAAGACACCAAGCACGTGATGATTAGCTATCAGTGGGATGTACAAAAACCCATGATTCAGCTGAAAAACCAGCTGCAGGCGAACGGCTACAAGGTTTGGATGGATGTTGATGAGATGGGAGGCTCTACGCTGGAGAGTATGGCCAAAGCTGTAGAGAATGCAAGTGTTGTGTTGGTTTGTGTGTCTCAGAAGTACAAGGAGAGTCCAAACTGCAGATCAGAGGCAGAATACACGTATCAGCTACACAAAGACGTCATTCCACTGATGATGGATTATAAATACAAACCTGATGGATGGCTTGGCATCATTGTGGGATCAAAATTCTGGATTGACTTCACCGAAAAGCATAAACTGGACACTAACGTGGAAAAACTAACTAAGGAACTCGGGAACAGAGGGAAAATCACGGCACAGGAAACCATTCAAGTTGCGACTGTTGATGTTGTGGACGCCGCGCCCCAGACCTCCATCAGATCGTGGACGAACAATGACGTAAGAAACTGGCTTAAGGAAGTACGGTTGGAAGGACGTGTGGATTCAAAAGCTGTAGAAAGACTGGATGGTCGGATGTTGTTGCGGCTGCAGGATCTTCGAAAGGAGAGTCCCGAATTCTTCTACTCATCCATCAGAACCGACTTTCACCTTGCTAGCGTGTTTGATGTTCTGGAATTCACAGATGAATTGGACAAATTGGAGAGATAG

Transcript

ANN07560-RA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan
PF13676	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225	Repeat	Armadillo	Interproscan
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46270	ARMADILLO-TYPE FOLD-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan