Gene detail

Detailed information of ANN07705-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:19284129...19293212
NR annotation: XP_022792408.1, ATP-dependent DNA helicase Q1-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN07705-RA

ATGGATAGCAAAACACAAAGACGAGTCGAGGTTGCTAAGCGCAAGGCCAGAGCAGAACTTAAAGGAGAAGACGGTTGGACCAAGTTGAATTATGCAGAGGAGTTCGATACGAGCCTTGATAGTTTCATAGACAATGTCCCAAGACAAGACTGCAATAAGATATCTAAATCAGAGTTTGTTGAAAAATTTGAGAAACCTAGAATCCCTGTTGTTTTGACGCATTCCATGGATCACTGGAAAGGAATGAGGAAGTGGACTGTTGAGAAACTAGCAAAGAAGTACAGACATCAAAAGTTTAAAGTTGGTGAAGATGATGATGGTTATGCAGTGAAAATGAAGATGAAATATTATGTTGAATACATGGCACACCAAAAAGATGACAGCCCACTGTATATATTTGACAGCTCATTTGGCGAGGGACTTTTCCCTAGCTTGGGGGCGGGGCGGGAAAAGGCCCTGGGATCGGCTGGTCACATGATCTCAGAACACCCAAATATCTTGGGTGTACTAAATTATCATAAGTTAAAAGGAACTTTCAAGATGGCGGTCCTCTCGAGTAAACCAAAATTGTTGTCAGTGCTTCGTCGAGTCGAATTTTCTTTAAATAACGGTAATTTTCCATCTTTAAATTTAAAACCTCTTCAAATGAAGTGCTTTGAATATATGCTGGAAGGTCAGGATGTTATCGGAGTCCTACCTACTGGATTTGGCAAGTCAATGCTCTTTCACCTTCTACCTCATTTCATTCCTGTGAAGACCACCAAGAACATAGTTATTGTGGTATGTCCATTAAATTCCATCATTGAAGATCAGCTGAAAGTCTTAAAAGCTCGGAGGATAACCGCTGATGTCTTACAGCTTGCTGTAAACGAGAAGGAACCGGCCGAGAACTTGTTCGGAAATGAACAAGAACTAAGCGAGCACTCAACGAAGTTTCCTCGAGATGTGGTTAATGGCAACACCTCAATTGTATTCGCCCATCCAGAGGCCCTGTTAAGTAAGGAAGGTCGAGAGCTAATGGGAAGCAAAGTCTTCCAGGACAATGTTGTTGCCTGCATTGTTGACGAAGCTTACTGTGTTGAATTATGGGGTGAAGATTTTAGAAAAGACTTCAAAGACTTGTCAGTGTTGAAAGCATTTTTTCCCAGTGTGCCTACCATGGCTCTGACAGCAACAGCACCGCCTCATTTATTGAGAGATTTGAAACAAAGTCTGCGATTGAAAAATGACTGCAAAATTGTAGCACGAAACCCAAACCGAGTGAACATATACCTGGACAAGAAAGTGCGTCTGAGTAATCACCATGGGAATGAAAGTTACGACAGAATCCTTGAACCCATTGCCAATGAACTGGCAATTCAAAGAGAAAAGTATCCAATGACAATCATTTATTTGAAACTGAAGTACTGTGGATATGCGTATGGCTTATTTGAAAGAATACTGGAAGACAAACAGTGTGTTGGAGACACATCAGAGCCCACTGCAAGACTGTTTGCACAGTTTCATGCCCCCCAAACGAGTCGCATGAAGAAAGATATTATATCAGAAATAAAGAAAGAACAATCGAGGGTGAGGGTGCTATTTGCAACATCAGCACTTGGCATGGGGGTTGATGCTCCTTATGTTACCAACATCATTCACATAACTCCACCAAGTAGCCTTGAAGCTTACATGCAAGAAATTGGTCGTGCTGGCCGTACAGGACTTTCGTCATGTGCTACGCTTTATTACAATAACTCTGACATTGGAAATAATAAAAAACACGTAGAAGAATCAATGAAATCATATTGCAGATCAGAAGACACCTGTCAGAGGAAACTCCTTCTGGATTACTTTGGATTCTCCAGTGTTCAACAAGAGAACTGTTGCTGCATATGCGATGGCAAGTTCAAAACAACTGTACAGGATCTACCCCAAGCTATTAGAAGCAAGGTCAGATTTCTACCAAACAATAACCGTGCTATCCTTGAAAGGTTAATCAAGAGTGTCATTTCTGACCACGAGTCCCAGGCGACATCAGAGGGTTCAATGCTGTTTGACATTTCGGTAGATAAGAATCTGGCTGCAAAGGTTATGGAGGGAGTGGAATTTATTGCGTCAGAAGCAGACTTGCTGAAATCATTTGGCATATGGGATGAAACCTGTTCTTCTCAAATCTTTTCGCTTATATCTGAGCACACGGCTATTTGTACAACTGACATGGACTCCGATGATGATTAG

Transcript

ANN07705-RA

Protein

Uniprot

Uniprot term	Description
Q6Q4H1	Bifunctional arginine demethylase and lysyl-hydroxylase PSR OS=Hydra vulgaris OX=6087 GN=PSR PE=1 SV=1
Q6PFM0	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Danio rerio OX=7955 GN=jmjd6 PE=2 SV=2
Q6NYC1	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Homo sapiens OX=9606 GN=JMJD6 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13710	DNA HELICASE RECQ FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006268	Biological Process	DNA unwinding involved in DNA replication	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0009378	Molecular Function	four-way junction helicase activity	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0043138	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan