Gene detail

Detailed information of ANN08050-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:24594539...24608660
NR annotation: CAH3139167.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WV55	Vesicle-associated membrane protein-associated protein A OS=Mus musculus OX=10090 GN=Vapa PE=1 SV=2
Q9Z270	Vesicle-associated membrane protein-associated protein A OS=Rattus norvegicus OX=10116 GN=Vapa PE=1 SV=3
Q0VCY1	Vesicle-associated membrane protein-associated protein A OS=Bos taurus OX=9913 GN=VAPA PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006268 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00635 all species →	Motile_Sperm	MSP (Major sperm protein) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000535 all species →	Domain	Major sperm protein (MSP) domain	Interproscan
IPR008962 all species →	Homologous_superfamily	PapD-like superfamily	Interproscan
IPR016763 all species →	Family	Vesicle-associated membrane-protein-associated protein	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10809 all species →	VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0033149 all species →	Molecular Function	FFAT motif binding	Interproscan
GO:0061817 all species →	Biological Process	endoplasmic reticulum-plasma membrane tethering	Interproscan
GO:0090158 all species →	Biological Process	endoplasmic reticulum membrane organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN08050-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.