Gene detail

Detailed information of ANN08089-RA in Leptoseris scabra

Genomic Location: Scaffold_6__1_contigs__length_62720928:26394484...26403064
NR annotation: XP_034322688.1, uncharacterized protein LOC117688644 [Crassostrea gigas]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN08089-RA

ATGGACGACATCATGGCATCGCTTGAGACTGACGATGAAGCGATAAAGACTCGTGATCAACTCATCAAGCTGCTTGGTGAAGCGGGCTTCAAAATACGGCGATGGTGTAGCAACCGGCCTAAGGTTCTGGAGGATGTGCCACTAGAAGATCGCATAGCGAATGTTAACATTGAGGAGTCAGAACTGCCATGCATGAAGGCGCTTGGAGTCCAGTGGAATGCTGAAACGGACATGTTTACCTTCAAGTTAAACCCACCAATGGACATTGACTACACGAAGCGAGGATTCCTGAAGAAACTTGCAACTCTGTTTGATCCCCTTCAAATGCTAGCACCATTTACAATCAGAGCAGGGATGGCAATGCAGGAAACTTGGCTGCTGGGACTGGGTTGGGATGATGAGTTCCCAACTGATTTGAAGAAGAGATGTCAAGGGTGGTTTAATGAGTTGCCAGAGCTTGCTGGAGTTCGGGTCCCTAGGTGTTATCGTGCAAAGGGAAAGCGTGTTGTTGACAGCTCGATTCACACAATGGTTGACGCTTCACATTTGGCGTATGCAGCAGTCAGTTATGTCCGGCATGAATATGAGAGTGGAGAAGTAATGGTGCGGTTTGTTGCAGCGAAAGCTAAGGTCGCCCCCACGAAGGCAACAAGCATCCCTCGTTTAGAGTTGATGGCTGCAGTATTGGGAGTCAGATTGTCGAGGAAGGTAGCAGAGCTGTTACAGATTCCGTTTGAAGCTTGTACAATATGGACGGACAGTGAGGATGTTGTTTGTTGGATTCAGGGACAGTCCAGGAGGTACAAGACTTTCGTCGCAAACAGAATTTCAGAGATTCATCAGAAGTCAAATCCTCAACAGTGGCGTCATGTTCCCACTGACTTTAACTGTGCTGACGACGCGACCCGAGGTCTACATGCAAGTCAGTTGACTGTGAACCACCGCTGGTTTCGCGGACCTGAGTTCTTGTACCACACCCCAGAATGCTGGCCCCAGAAGAAACGCATCCGAGAGGAAGAGACTTCTGAAGACTGCCAAGTGGAAATAGCCAAGCCGAAGATGACGTTCGCAACTGATGTTTCTGAACCGTTGATGGATCCATTGAAGTACTCCAGCTGGACCAGACTGATAAGAGTCACTGCGTGGGTGATGAGATTTGTTGCCAAGCTGTCTACCAAGGTTAAGAAGAGGGACAACCTTCCAGAAGCACAGATGAAAGAGTCATTGACACCTGCTGAGTTAGATGAAGCTAGAAAGTTCTGGGTGAAACAAGCACAGAGTGAGCAATTCCCAGAGGAGGTGCGAGACTTGAACAGAGGGAAGGAAGTGAGGAAGCAGAGCCATCTAAAAGCGCTAACCCCAACTATGGATGAAGTGGGCGTGTTGCGAGTTGGCGGACGACTAACTAGAGCAGCTCTCCCTTACGATGCTATTCACCCAATGATACTACCAAAAAAGCATCACATTACTCGCCTAATTGTAGCAGATGTACACAATCGGTGTCACCATGCAGGGGTAAATCACGTCTTATCACAAGTGCGACATCACTACTGGGTTGTGGATGGTCGTCAGGAAGTGAAGAATTGGGACAGAGACTGTAAGGTGTGCGAAAAGTGGCGAGCAGAACCGGCAGTGCAGATAATGGCACCTCTCCCGGAATCCAGACTTGGAACAACCATGAGGGCGTTCGCAAAATCCTGTGTTGATTACGCTGGGCCGTTTGTTACCAAGATAACACGAAGAGTTTCCGCCAAGAGGTACTTGTGCTTGTTTACATGTGCAGCCACCAGAGCCGTGCATCTTGAGATGGCATTTTCTCTGAGTAGCGCAGATTTCTTGAATGCATTCAGTCGGATGGTGGCTACCAGGGGGAGACCAGAAGAAGTCACAAGTGACAACGGTACTAACTTTGTGGGAGCCGAGAGGGAGCTGCGAGAACTTGTTCAGTCAATGGATCATAAGGGCATTGCAGACGACGCTGCTAACAAGGGGATCAAGTGGAACTGGAATCCGCCCCTTGGTTCGCACTTTGGAGGAGTGTTTGAATCCCTGATTAAAGTAGCCAAGAAAACCTTGAAGTCAATTGTTGGAAATGCAGGGATGAATGATGATGAACTCCAAACTGCCATTAAAGAAGTAGAAGCACTAATGAACTCGAGACCGCTGACGTATGAGGGGACCGACGCCCGTGATGAACCCGTGCTGACGCCGAGCCATTTCCTTGTTGGGCAGTTGGGAGGACAGTTAGCCCCTCGAGTCGCTGATGAAGTAGCATTCAACCCTAGAAACCGATGGAGACTAATCCAGAGTCTTCGCTGGAGGGATGAATTTCTTGCGACGCTGAACACACGAAAGAAGTGGAGAGAGATACGTGACAACCTGAAAACAGGAGATGTAGTGCTGGTTGTTGATCAGAATGCACCGCGTGCTAAGTGGGATCTGGGACGAGTTGCTGAGGTGTTCCCAGGCAAAGATGGGCAAGTGCGAGTTGTTCGAGTAATTGTCAAAGGTCACAACTTCATCCGTCCAGTTACCCGGCTGTGCCCACTGAATAAATCAAAAGTGGAAAATAGAGAAAACAAACAAGATGAAGAGGAAATGGATGTGACAGAGAAAAAAGAGGATAAACAATTAACAGTGACAAGAGAACTAGAGATTATTGATGGACTGAAAGAGGAAAGCGATCTTAGCAGTGATAAGAATGGTCAGTCAACTGGAATGGAAACCCTGACAACTATTGCATGTAACTCTGCATTACATGATTCTGGAGATAATGAAGAAGAATTTTGTGGAGATGATGGCAATGAAATTGATAGTAACTTGAACAGCAAGAGTGATGATGATGGCTGGATTACGCCTGATAATATTAGCAATGTCAAGGATGAGATGGGCAGAGGTGGCTTTAGTGCATCCCCTGCATCTGATGTCACTGTGGGTTGTCTTACCACCGACTTTGCAATTCAGAATGTGCTGATTCAGATGGGAATCCACGTTATTTCACTGGATGGTATGTTGATCAAGGAAGCGCGAAGCTATGTGTTAAAATGTTATGCGTGTTTCAGTTTCAATACGGGCCGACGACGCGCTCAACAAATTGACCGACAGTCAGGACTGCAAACGTCACAGAAGGAAAAGAGTGAGAGAATTTCATTCACAATTCATCCACATAAACCATGCAGTCACAAGCATCATTTGAAGAACTTCAAATTGCTCCAAAATGACCCTGAATGTTTTACATTCTCCACTAATTTCGTTCAAACGCGATTAAAACATAGAGTAACAAGGCAGTTAGGAAAGAAGTTTTGCCCGTGGTGCGGTAATAATACTCTCCTCAAGGTATCAGTGAGTGTTGATCAAAATGGTGTCACTCATTACCAAGTCCCAAATACGAACAAACCGTTCAACATCAGGGGGAAAAAGTTCCCACTTCCTTTACCTAGGGGCGGTCGTCAAAGTGGCGCCCCGGTCCTCAGTGAAGATCAACCGCGTGGTCAACACCGTCTGCCTCGCAGTAAGGATCACGTGAATGTATTTGATGCGGATTACGTCGCGCGGGCTTCCCCATTTGCTGCTAAAGACGTGACCAGCCGAGCCTCTCAGCTGGGATATCACTTGAAAGGTTCACAAAACAACAAGAATCCAAATGAAGTCAGGAAAAAGAGTGCACGGAGAAACAAAAACTTTATTGACCATCACACATGTTAA

Transcript

ANN08089-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BW10	RNA-binding protein NOB1 OS=Mus musculus OX=10090 GN=Nob1 PE=1 SV=1
Q6VEU1	RNA-binding protein NOB1 OS=Rattus norvegicus OX=10116 GN=Nob1 PE=2 SV=1
Q3T042	RNA-binding protein NOB1 OS=Bos taurus OX=9913 GN=NOB1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000000 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05380 all species →	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF18701 all species →	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan
PF08772 all species →	NOB1_Zn_bind	Nin one binding (NOB1) Zn-ribbon like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008042 all species →	Family	Retrotransposon, Pao	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR040676 all species →	Domain	Domain of unknown function DUF5641	Interproscan
IPR036283 all species →	Homologous_superfamily	NOB1 zinc finger-like superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR014881 all species →	Domain	Nin one binding (NOB1) Zn-ribbon-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22955 all species →	RETROTRANSPOSON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN08089-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.